MmuEX6038626 @ mm9
Exon Skipping
Gene
ENSMUSG00000031957 | Ctrb1
Description
chymotrypsinogen B1 [Source:MGI Symbol;Acc:MGI:88559]
Coordinates
chr8:114211001-114213119:-
Coord C1 exon
chr8:114213041-114213119
Coord A exon
chr8:114212445-114212625
Coord C2 exon
chr8:114211001-114211134
Length
181 bp
Sequences
Splice sites
3' ss Seq
TGAGCTTCTTGTCCCCACAGGTT
3' ss Score
11.65
5' ss Seq
ATGGTGAGT
5' ss Score
10.13
Exon sequences
Seq C1 exon
GACAACCGATGTGGTGGTAGCTGGAGAGTTTGATCAGGGCTCCGATGAAGAGAATGTCCAGGTCCTGAAAATCGCTCAG
Seq A exon
GTTTTTAAGAACCCCAAGTTCAACTCCTTCACCGTGCGTAATGACATCACCCTGCTGAAGCTGGCCACTCCTGCCCAGTTCTCTGAGACTGTGTCTGCCGTGTGTCTGCCCACTGTTGACGATGACTTCCCTGCTGGGACACTGTGTGCCACCACTGGCTGGGGCAAGACCAAATACAATG
Seq C2 exon
CCCTCAAGACCCCTGACAAGCTGCAGCAGGCTGCCCTGCCCATCGTGTCCGAGGCTAAGTGCAAGGAGTCCTGGGGTTCCAAGATCACCGATGTGATGATCTGCGCAGGCGCCAGTGGCGTCTCTTCCTGCATG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000031957-'3-4,'3-3,4-4=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0008921=Trypsin=FE(11.7=100)
A:
PF0008921=Trypsin=FE(26.9=100)
C2:
PF0008921=Trypsin=FE(19.7=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Human
(hg38)
No conservation detected
Rat
(rn6)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGTGGTGGTAGCTGGAGAGTT
R:
CATGCAGGAAGAGACGCCAC
Band lengths:
204-385
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
Other AS DBs: