MmuEX6038626 @ mm10
Exon Skipping
Gene
ENSMUSG00000031957 | Ctrb1
Description
chymotrypsinogen B1 [Source:MGI Symbol;Acc:MGI:88559]
Coordinates
chr8:111687369-111689219:-
Coord C1 exon
chr8:111689141-111689219
Coord A exon
chr8:111688545-111688716
Coord C2 exon
chr8:111687369-111687772
Length
172 bp
Sequences
Splice sites
3' ss Seq
TGTCCCCACAGGTTTTTAAGAAC
3' ss Score
-0.55
5' ss Seq
ATGGTGAGT
5' ss Score
10.13
Exon sequences
Seq C1 exon
GACAACCGATGTGGTGGTAGCTGGAGAGTTTGATCAGGGCTCCGATGAAGAGAATGTCCAGGTCCTGAAAATCGCTCAG
Seq A exon
AACCCCAAGTTCAACTCCTTCACCGTGCGTAATGACATCACCCTGCTGAAGCTGGCCACTCCTGCCCAGTTCTCTGAGACTGTGTCTGCCGTGTGTCTGCCCACTGTTGACGATGACTTCCCTGCTGGGACACTGTGTGCCACCACTGGCTGGGGCAAGACCAAATACAATG
Seq C2 exon
CCCCCCCCCCCCATCTTTCCATTTCTTAATTGAAATTTGTTAATTAAGGCTGGTCGTGGTGGCACATTTTAATTTCCAGCACTTGGGAGGCAAAGGCAGGCAGAGCCTGTGAGTTCCAGGCCAGGCAGAGCCAAATAATAAGACACTGTCTGAAAAGAAAAATTATTAACTAGTAATCTATAAAATTAACAATTATTATGTGTCAGTTAAGACTTAATATTTAAGACTCATCCAACACAAAGGGTTGCTGATAAGATGGGGCCTGAAGGAAGCCCTTGGGCTCAGCAGGAGGGATTCTCTCTGAGCCTGGACTTGATTGTACATCCCCTCATGGGTCTCTTAAGACTCCCGCAGGGTGGAACCCGCGCTCTCTTGAAATAAATCTTCCACACTCACTGCCCATG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000031957-'6-6,'6-5,7-6
Average complexity
C3*
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=NA
Domain overlap (PFAM):
C1:
PF0008921=Trypsin=FE(11.7=100)
A:
PF0008921=Trypsin=FE(26.9=100)
C2:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Rat
(rn6)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCAGGTCCTGAAAATCGCTCA
R:
CCCTTTGTGTTGGATGAGTCT
Band lengths:
266-438
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types