DreEX0025481 @ danRer10
Exon Skipping
Gene
ENSDARG00000044002 | cyp2x7
Description
cytochrome P450, family 2, subfamily X, polypeptide 7 [Source:ZFIN;Acc:ZDB-GENE-110114-2]
Coordinates
chr25:17279066-17281634:-
Coord C1 exon
chr25:17281482-17281634
Coord A exon
chr25:17281231-17281391
Coord C2 exon
chr25:17279066-17279239
Length
161 bp
Sequences
Splice sites
3' ss Seq
TATTATTTACATTTGTACAGGGA
3' ss Score
6.12
5' ss Seq
ATGGTGAGA
5' ss Score
7.23
Exon sequences
Seq C1 exon
GTGTTGTGTTGGCTGACTATGGACCCCTTTGGAAGGACCATCGGCGTTTTGCTCTCATGACCCTGAGAAATTTTGGTCTGGGGAAGCAGTCCATGGAGGAGAGAATTCTGGGGGAAATTTCACACATTGTTGATTTCCTTGACAAGAACACGG
Seq A exon
GGAAAACAGTCGATCCTCAGATTATGTTTCATAATATTGCATCAAATGTTATAAACCTGGTTCTGTTCGGATGCCGTTTTGATTACAACAACGAATTCCTTCGGGGCTACATTCAGCGCATTGCTGAGAATTTAAGGATCCTTAATGGACCCTGGAACATG
Seq C2 exon
ATATACGACACATTTCCTTTATTGAGAATCCTGCCCCTGCCTTTTAAAAAAGCATTTGATAATGTAAAAATAATAAAAAGTATGAATCGAAAGTTGATTGATGAACACAAGAGCACAAGAGTCCCAGGACAGCCGAGAGACTTCATTGACTGCTATCTGGATGAGCTCGATAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000044002_CASSETTE1
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.034
Domain overlap (PFAM):
C1:
PF0006717=p450=FE(11.2=100)
A:
PF0006717=p450=FE(11.6=100)
C2:
PF0006717=p450=FE(12.5=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm9)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ATCGGCGTTTTGCTCTCATGA
R:
TCCTGGGACTCTTGTGCTCTT
Band lengths:
243-404
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]