DreEX0025484 @ danRer10
Exon Skipping
Gene
ENSDARG00000043997 | cyp2x8
Description
cytochrome P450, family 2, subfamily X, polypeptide 8 [Source:ZFIN;Acc:ZDB-GENE-040704-28]
Coordinates
chr25:17278264-17292664:-
Coord C1 exon
chr25:17292477-17292664
Coord A exon
chr25:17292263-17292404
Coord C2 exon
chr25:17278264-17278405
Length
142 bp
Sequences
Splice sites
3' ss Seq
AACTGTTTCTGATTTGTCAGGGA
3' ss Score
4.77
5' ss Seq
CAGGTAACC
5' ss Score
8.66
Exon sequences
Seq C1 exon
TAAAATGTCAGCAAGAGATTGATGATGTTCTGGAGGGTAAAGATCAGGTGTCGTATGAAGACCGAGACAATATGCCGTACACACTGGCTGTGATTCACGAGGTTCAGCGTGTCGCTAACACTGTACCGCTAAGTGTGTTTCACTGCACTACACGAGACACAGAGCTAATGGGCTACAGCATCCCAAAG
Seq A exon
GGAACACTCATCATTCCCAACCTCACTATTGTTCTAAAAGAAGAAGGTCAGTGGAAGTTTCCTCATGAGTTCAACCCAGCAAACTTCTTGAATGAGCAGGGCCAGTTTGAGAAGCCTGAAGCCTTCATACCCTTCTCCACAG
Seq C2 exon
GGAACTGTAATCATTCCTAATCTCACTGTTGTCCTAAAAGAAGAGGGTCAGTGGAAGTTTCCTCATGAGTTTAACCCAGCAAACTTCTTGAATGAGCAGGGCCAGTTTGAGAAGCCTGAGGCCTTCATACCCTTCTCCACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000043997_CASSETTE1
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (No Ref, Alt. Stop)
No structure available
Features
Disorder rate (Iupred):
C1=0.016 A=0.010 C2=NA
Domain overlap (PFAM):
C1:
PF0006717=p450=FE(13.6=100)
A:
PF0006717=p450=FE(10.3=100)
C2:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Rat
(rn6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTGGCTGTGATTCACGAGGTT
R:
TGGAGAAGGGTATGAAGGCCT
Band lengths:
244-386
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]