HsaEX6095221 @ hg19
Exon Skipping
Gene
ENSG00000130612 | AC008537.1
Description
cytochrome P450, family 2, subfamily G, polypeptide 1 pseudogene [Source:HGNC Symbol;Acc:2633]
Coordinates
chr19:41404043-41406413:+
Coord C1 exon
chr19:41404043-41404230
Coord A exon
chr19:41404342-41404483
Coord C2 exon
chr19:41405879-41406413
Length
142 bp
Sequences
Splice sites
3' ss Seq
TGCCCTCATTTTCACCCCAGGGC
3' ss Score
9.75
5' ss Seq
CTGGTAGGT
5' ss Score
8.37
Exon sequences
Seq C1 exon
CTAAGATTCACGAAGAGATTAACCAGGTGATTGGACCACACCGGCTCCCAAGGGTGGATGACCGGGTCAAGATGCCCTACACAGATGTCGTTATCCATGAAATACAGAGACTGGTAGACATCGTGCCCATGGGTGTCCCCCACAACATCATCCAGGACACTCAGTTTCGAGGTTACCTTCTGCCCAAG
Seq A exon
GGCACAGACGTATTTCCCCTGCTTGGCTCTGTCCTCAAAGACCCCAAATACTTCCGCTACCCAGATGCCTTCTATCCCCAGCACTTTCTGGATGAGCAGGGCCGCTTCAAGAAGAATGAAGCCTTTGTGCCTTTTTCCTCTG
Seq C2 exon
GAAAGCGCATCTGCTTGGGCGAGGCCATGGCCCGCATGGAACTCTTTCTCTACTTCACCTCCACCCTTCAGAACTTCTCTCTATGCTCGCTGGTGCCACTTGTGGACATCGATATCACCCCCAAGCTCTCAGGCTTTGGCAACATCACCCCGACCTATGAGCTCTGCCTTGTGGCCCGCTGAGCCACACCTCCTGCGGGGCAAGGAGGAAGTGGTGAAGAATGCAGCTCTCCTCTCGTGTTCAGGAGCACCCCCTCTTCCTCATCTTACTAATCCTCAAGCATCCCTAAGAGGAGGCACTATGATTACAGAGTCAGCCAGGGTCACCTGAGAATGTACAGCTGCGTGTCTTCCTCTCCCGTAGAAGAGCAACGCCCTGTGCAAGATTTGCACCTCTGCCTGCAGGTTTCATGGTCACATGGTCACCGTTGCTTAGGTTTCTGGCTGCATCAAATTATTACTGCAGTCCCTGTGTCTTCATGTTGTCCCTTTTTGTGTGTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000130612-'29-32,'29-31,30-32=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (No Ref, Alt. Stop)
No structure available
Features
Disorder rate (Iupred):
C1=0.003 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
NA
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Rat
(rn6)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TTCGAGGTTACCTTCTGCCCA
R:
CTTCACCACTTCCTCCTTGCC
Band lengths:
242-384
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)