DreEX0027464 @ danRer10
Exon Skipping
Gene
ENSDARG00000087373 | dnah5
Description
dynein, axonemal, heavy chain 5 [Source:ZFIN;Acc:ZDB-GENE-110411-177]
Coordinates
chr16:9342800-9349415:+
Coord C1 exon
chr16:9342800-9342921
Coord A exon
chr16:9346786-9346935
Coord C2 exon
chr16:9349170-9349415
Length
150 bp
Sequences
Splice sites
3' ss Seq
AAATGTGTGCATGTTAACAGATT
3' ss Score
5.02
5' ss Seq
CAGGTATGA
5' ss Score
9.46
Exon sequences
Seq C1 exon
GAGGTGCTTCCCTAGACCTGAAGGCCTGTCCACCCAAAGCTGCAAAGTGGATCCTGGACATAACGTGGCTTAACTTGGTGGAGCTGAGCAAACTGTGGCAGTTTTCTGACATTCTGGACCAG
Seq A exon
ATTGGCCGTCATGAGAAGCAATGGAGGAGCTGGTTTGATCGAGAGGCTCCAGAGGAAGAACCAATCCCAAATGCATATGACCAGGCTTTGGACTGTTTCAGGCGGCTGCTCCTTATTAGATCTTGGTGTCCAGATAGAACAATTGCTCAG
Seq C2 exon
GCTCGAAAGTACATCACGCAATCAATGGGAGAAAGATATGCTGAGGGAGTTATTCTTGACCTGGAGAAGACCTGGGAAGAGTCTGAGCCTCGCACACCTCTCATCTGCTTCCTGTCTATGGGTTCAGACCCTACAGACTCCATCATTGCCCTGGGCAAACGGCAGAGAATTGAGACTCGCTACGTCTCAATGGGACAGGGGCAGGAAGTTCATGCACGCAAGCTTCTGCAGCACTCCATGGCTAAT
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000087373-'40-42,'40-40,41-42
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0302810=Dynein_heavy=PU(4.9=82.9)
A:
PF0302810=Dynein_heavy=FE(49.0=100)
C2:
PF0302810=Dynein_heavy=FE(11.6=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TTGGTGGAGCTGAGCAAACTG
R:
TCCCATTGAGACGTAGCGAGT
Band lengths:
243-393
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]