GgaEX6020558 @ galGal4
Exon Skipping
Gene
ENSGALG00000012997 | DNAH5
Description
dynein, axonemal, heavy chain 5 [Source:HGNC Symbol;Acc:HGNC:2950]
Coordinates
chr2:76693310-76696623:+
Coord C1 exon
chr2:76693310-76693431
Coord A exon
chr2:76694370-76694519
Coord C2 exon
chr2:76696378-76696623
Length
150 bp
Sequences
Splice sites
3' ss Seq
CTTTGTTGACATAACCACAGATT
3' ss Score
4.82
5' ss Seq
CAGGTACCT
5' ss Score
8.16
Exon sequences
Seq C1 exon
GTGGTGCTTCCCTAGACCTTAAAACTTGTCCTCCCAAGCCAGCTAAATGGATCCTGGATATGACTTGGCTGAATTTGGTGGAGCTTAGTAAACTTAGCCAATTTTCACATATTCTTGACCAA
Seq A exon
ATTTCTAGAGCAGAGAAAGAGTGGAAGACCTGGTTTGATAAAGAGAATCCTGAAGAAGAACCAGTTCCTTGTGGCTATGGTCAATCCCTGGATTGCTTCAGACGTCTTCTTCTTATCAGATCTTTGTGCCCTGACAGGACCATTGCTCAG
Seq C2 exon
GCAAGAAAGTATGTTGTTGACACTATGGGGGAGAAATATGCAGAAGGAGTAATCTTGGACTTGGAGAAGACTTGGGAAGAGTCAGATCCACGTGTTCCTCTCATATGCTTTCTTTCCATGGGCTCTGATCCAACAGACTCCATCATTGCTTTGGGAAAAAAGCTGAAGACAGAGACACGTTATGTTTCTATGGGCCAAGGGCAAGAAATCCATGCTCGTAAACTTCTGCAGCAGACAATGGCTCAT
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000012997-'72-78,'72-77,73-78=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0302810=Dynein_heavy=PU(4.9=82.9)
A:
PF0302810=Dynein_heavy=FE(7.0=100)
C2:
PF0302810=Dynein_heavy=FE(11.6=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AAACTTGTCCTCCCAAGCCAG
R:
GGAGTCTGTTGGATCAGAGCC
Band lengths:
242-392
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]