MmuEX6053028 @ mm9
Exon Skipping
Gene
ENSMUSG00000022262 | Dnahc5
Description
dynein, axonemal, heavy chain 5 [Source:MGI Symbol;Acc:MGI:107718]
Coordinates
chr15:28365925-28374082:+
Coord C1 exon
chr15:28365925-28366046
Coord A exon
chr15:28367854-28368003
Coord C2 exon
chr15:28373837-28374082
Length
150 bp
Sequences
Splice sites
3' ss Seq
CCAACCCATGGTGTTTTCAGATA
3' ss Score
6.55
5' ss Seq
CAGGTAAAG
5' ss Score
9.65
Exon sequences
Seq C1 exon
GTGGTGCCTCATTGGATCTAAAAGCCTGTCCTCCTAAGCCATCAAAATGGATCCTAGACATGACTTGGCTGAATTTGGTGGAACTTAGCAAACTTAAACAGTTTTCAGACATCCTTGATCAG
Seq A exon
ATATCAAGGAATGAAAAGATGTGGAGAGTTTGGTTTGATAAAGAAAACCCAGAAGAGGAGCCGCTTCCAAATGCCTACGATAAATCTCTCGACTGCTTCAGACGCCTCCTTCTGATTAGGTCCTGGTGTCCCGACAGAACCATTGCCCAG
Seq C2 exon
GCTCGCAAGTACATCATGGACTCCATGGGAGAAAACTATGCAGAGGGAGTTATCCTGGACTTGGAAAAGACATGGGAGGAATCTGACCCACGGACACCACTCATCTGCCTCCTGTCCATGGGCTCCGACCCCACAGATTCCATCATTGCTTTGGGAAAGAGACTAAAAATAGAAACACGCTATGTGTCCATGGGCCAGGGCCAGGAGGTCCATGCGAGGAAGCTGTTGCACCAGACCATGGCAAAT
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000022262-'68-69,'68-68,69-69=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0302810=Dynein_heavy=PU(4.9=82.9)
A:
PF0302810=Dynein_heavy=FE(7.0=100)
C2:
PF0302810=Dynein_heavy=FE(11.6=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AAGCCTGTCCTCCTAAGCCAT
R:
GATGGAATCTGTGGGGTCGGA
Band lengths:
245-395
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
Other AS DBs: