DreEX0027481 @ danRer10
Exon Skipping
Gene
ENSDARG00000060165 | dnah7
Description
dynein, axonemal, heavy chain 7 [Source:ZFIN;Acc:ZDB-GENE-070912-282]
Coordinates
chr9:25159070-25169296:-
Coord C1 exon
chr9:25168961-25169296
Coord A exon
chr9:25164630-25164756
Coord C2 exon
chr9:25159070-25159264
Length
127 bp
Sequences
Splice sites
3' ss Seq
ACAATTCTTCCTCTATCTAGACT
3' ss Score
7.25
5' ss Seq
CTTGTGAGT
5' ss Score
7.15
Exon sequences
Seq C1 exon
ACAGTTGCAGGAAATAGAGGATAAAATCCTAGAAGTCCTCTCTGCCTCAGAGGGCAATATTTTAGAAGATGAGACGGCTGTCCAGATCCTCTCTTCTTCTAAAGTTCTAGCCAATGAGATCTCTGAGAAACAAGCAATTGCTGAGGTTACTGAGCTGAAGATTGACCAGACACGCTTGGGCTACACTCCCATCGCCATCCACTCTGCAATTTTGTTTTTCTCCATTGCTGACTTGGCCAACATTGAGCCCATGTATCAGTACTCTCTAACCTGGTTCATCAATCTCTTCATCATGTCCATTGATAATTCCCAAAAAAGTGACCTTCTAGAAGAAAG
Seq A exon
ACTCCAGATTCTGAAGGACCATTTCACGTACTCACTTTACTGCAACGTGTGTCGCTCTTTGTTTGAGAAGGACAAACTCCTCTTCTCCTTCTGCCTCACTGTCAACCTGCTCAAACACAACAAGCTT
Seq C2 exon
GTGGATGAGAAAGAATGGCGATTTCTTTTGACAGGTGGTGTGGGTCTGGATAACCCTCATTCAAACCCATGCACCTGGTTGCCCAAAACATCCTGGGATGAGATCTGTCGCCTGGATGAGATGGAGCGCTTTAAAGGCCTGCGCAAAGACCTGGCTCGACTCCGGGAGGGCTGGAAAGAGGTTTATGATAGCAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000060165-'52-52,'52-51,53-52
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF127812=AAA_9=PD(17.8=36.3)
A:
NO
C2:
PF0302810=Dynein_heavy=PU(6.9=75.4)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGCCAACATTGAGCCCATGTA
R:
AGGCCTTTAAAGCGCTCCATC
Band lengths:
242-369
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]