GgaEX1020214 @ galGal3
Exon Skipping
Gene
ENSGALG00000007841 | DNAH7
Description
NA
Coordinates
chr7:10685030-10688773:-
Coord C1 exon
chr7:10688438-10688773
Coord A exon
chr7:10686270-10686396
Coord C2 exon
chr7:10685030-10685224
Length
127 bp
Sequences
Splice sites
3' ss Seq
TCTTTTTCTGACACCTGTAGGTT
3' ss Score
9.51
5' ss Seq
ATGGTAATT
5' ss Score
6.49
Exon sequences
Seq C1 exon
GCAACTAAAAGAAATAGAAGACAAGATTTTAGAAGTTCTTTCGGCTTCAGAAGGAAATATTTTGGAGGATGAAACTGCTATTAAGATATTGTCTTCTTCCAAAGTTCTGGCTAATGAGATTTCTGAAAAGCAAGCTGTAGCTGAAGAAACAGAAAAGAAGATTGATGCCACTCGTATGGGCTATCGTCCTATCTCTGTCCATTCATCAATCTTGTTTTTTTCTATTACTGATCTAGCCAACATTGAGCCTATGTATCAGTACTCTCTCATGTGGTTTATTAACCTTTTCATCATGTCTATAGATAACTCAGAGAAATCAGAAGATTTACAAACAAG
Seq A exon
GTTGAAGATTCTTAAGAATCATTTCACTTACTCACTTTATGTCAATATCTGTCGCTCACTGTTTGAAAAGGACAAGCTGCTCTTCTCTTTTTGTCTAACTGTGAACCTCCTGAAATATGAGAAAATG
Seq C2 exon
ATTGATGAGGATGAGTGGAAATTTCTGTTGACTGGTGGCATAGGCTTGGATAATCCCTTCTCTAATCCATGCACCTGGCTTCCTCCACAATCATGGGATGAAATTTGTCGGCTGGAAGACTTGCCATGCTTCACAAACATTCGTAAGGATTTTAATCGACTTAAGGATGGATGGAAATTGGTGTATGACAGCTTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000007841-'43-45,'43-44,45-45=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF127812=AAA_9=PD(17.7=36.3)
A:
NO
C2:
PF0302810=Dynein_heavy=PU(6.9=75.4)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGATGCCACTCGTATGGGCTA
R:
GGAAGCCAGGTGCATGGATTA
Band lengths:
257-384
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]