MmuEX1008692 @ mm10
Exon Skipping
Gene
ENSMUSG00000096141 | Dnah7a
Description
dynein, axonemal, heavy chain 7A [Source:MGI Symbol;Acc:MGI:2685838]
Coordinates
chr1:53447318-53456871:-
Coord C1 exon
chr1:53456536-53456871
Coord A exon
chr1:53448929-53449055
Coord C2 exon
chr1:53447318-53447512
Length
127 bp
Sequences
Splice sites
3' ss Seq
CTCCCTCTGATGGCCCTTAGGCT
3' ss Score
8.08
5' ss Seq
GCGGTCAGT
5' ss Score
6.52
Exon sequences
Seq C1 exon
GCAGTTAAAGGAAATAGAAGACAAGATTTTAGAAGTTCTCTCATTATCAGAAGGCAATATATTAGAAGATGAGACTGCGATTAAAATATTATCTTCCTCCAAGTCTTTGGCTAATGAGATTTCTCAGAAGCAGGAAGTGGCTGAGGAGACAGAGAAAAAGATTGACATTACCCGCATGGGCTATCGGCCCATTGCTATCCATTCTTCCATCCTGTTCTTCTCCATCGCTGATCTAGCTAACATCGAGCCCATGTACCAGTATTCTCTGACCTGGTTTATTAACCTGTTCATCCTGTCCATTGAAAATTCGGAGAAATCAGACATCTTATCAAAAAG
Seq A exon
GCTTCAGATCCTCAGAGATCACTTCACCTACTCACTCTATGTCAACATCTGCCGCTCCCTCTTTGAAAAGGACAAGCTGCTGTTTTCCTTTTGTCTCACTGTGAATCTGCTGATACATGACAATGCG
Seq C2 exon
ATTAACAAAACAGAGTGGAGATTTCTACTCACTGGTGGCATTGGGCTGGATAATCCTTATACCAATCCTTGCACATGGCTTCCTCAAAAATCCTGGGATGAGATTTGTCGACTAGATGACTTACCTGCCTTTAAGACCATTCGAGAGGAGTTTATGCGCTTAAAGGATGGATGGAAAAAAGTATATGACAGTATG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000096141_CASSETTE2
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.027 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF127812=AAA_9=PD(17.7=36.3)
A:
NO
C2:
PF0302810=Dynein_heavy=PU(6.9=75.4)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCTATCGGCCCATTGCTATCC
R:
TTGAGGAAGCCATGTGCAAGG
Band lengths:
244-371
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types