GgaEX1020214 @ galGal4
Exon Skipping
Gene
ENSGALG00000007841 | DNAH7
Description
dynein, axonemal, heavy chain 7 [Source:HGNC Symbol;Acc:HGNC:18661]
Coordinates
chr7:9197064-9198770:-
Coord C1 exon
chr7:9198705-9198770
Coord A exon
chr7:9198304-9198430
Coord C2 exon
chr7:9197064-9197258
Length
127 bp
Sequences
Splice sites
3' ss Seq
TCTTTTTCTGACACCTGTAGGTT
3' ss Score
9.51
5' ss Seq
ATGGTAATT
5' ss Score
6.49
Exon sequences
Seq C1 exon
CGTCTATAGAATGGGAAACGGATTTCAGAAGACGATTCAAAATCGGCTGTTTGGATTTGGGCTATG
Seq A exon
GTTGAAGATTCTTAAGAATCATTTCACTTACTCACTTTATGTCAATATCTGTCGCTCACTGTTTGAAAAGGACAAGCTGCTCTTCTCTTTTTGTCTAACTGTGAACCTCCTGAAATATGAGAAAATG
Seq C2 exon
ATTGATGAGGATGAGTGGAAATTTCTGTTGACTGGTGGCATAGGCTTGGATAATCCCTTCTCTAATCCATGCACCTGGCTTCCTCCACAATCATGGGATGAAATTTGTCGGCTGGAAGACTTGCCATGCTTCACAAACATTCGTAAGGATTTTAATCGACTTAAGGATGGATGGAAATTGGTGTATGACAGCTTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000007841-'63-69,'63-68,64-69
Average complexity
C2
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
PF0302810=Dynein_heavy=PU(25.1=75.4)
Main Inclusion Isoform:
ENSGALT00000012727fB6862
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGGGAAACGGATTTCAGAAGACG
R:
GCTGTCATACACCAATTTCCATCC
Band lengths:
247-374
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]