DreEX0027505 @ danRer10
Exon Skipping
Gene
ENSDARG00000000606 | dnah7l
Description
dynein, axonemal, heavy polypeptide 7 like [Source:ZFIN;Acc:ZDB-GENE-030616-623]
Coordinates
chr1:21422867-21433176:+
Coord C1 exon
chr1:21422867-21422990
Coord A exon
chr1:21431524-21431720
Coord C2 exon
chr1:21432973-21433176
Length
197 bp
Sequences
Splice sites
3' ss Seq
TGTTTGTTTTGTGATTGTAGCCA
3' ss Score
5.09
5' ss Seq
CTGGTAGTG
5' ss Score
0.67
Exon sequences
Seq C1 exon
GTTGAGTTGGATGCAACAATGTCCACTTTAAAAGAGAAGCAGAATAAACTTCAAGAGGTGGAGAATCAAATCAAAGTTTTGCAGGACCAGTTTGAGTCCAGCATGGCTGAGAAAGAGACACTGG
Seq A exon
CCAAAACCATGGCTTTGACTGAAGCACGTCTGGGACGGTCAGGAAAGTTAACATCTGCTCTGGGTGATGAGCAGGTGCGATGGCAAGAAAGCATTACTCTGTTTGAGCAGGAGATCCACAACGTCATTGGAAATGTGTTCATCGCTGCAGCTTGTGTGGCTTATTATGGGGCCTTTACCTCCCATTACAGACAACTG
Seq C2 exon
CTTATAGATCACTGGATTACACGCTGTCAAAGTTTGGGGATCCCAATCAGTGACAACTTCAGTCTTATTGGCATTCTAGGAGATCCATATGAGATCCGACAGTGGAATGCCGAAGGGTTGCCTCGGGATAATGTCTCCACAGAGAATGGAATTCTTGTGATGCGAGGACGCCGCTGGCCTTTAATGATTGACCCTCAAGATCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000000606_CASSETTE2
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF127772=MT=FE(12.2=100)
A:
PF127772=MT=FE(19.4=100)
C2:
PF127772=MT=PD(2.1=10.3),PF127812=AAA_9=PU(18.6=63.2)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGAGTTGGATGCAACAATGTCCA
R:
GACATTATCCCGAGGCAACCC
Band lengths:
257-454
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]