HsaEX6014168 @ hg38
Exon Skipping
Gene
ENSG00000115423 | DNAH6
Description
dynein axonemal heavy chain 6 [Source:HGNC Symbol;Acc:HGNC:2951]
Coordinates
chr2:84706896-84709546:+
Coord C1 exon
chr2:84706896-84707019
Coord A exon
chr2:84707520-84707716
Coord C2 exon
chr2:84709343-84709546
Length
197 bp
Sequences
Splice sites
3' ss Seq
TTTTCTTAAAATTTTTCTAGCAA
3' ss Score
6.63
5' ss Seq
TCAGTGAGT
5' ss Score
7.68
Exon sequences
Seq C1 exon
GCTGAACTTGACATTACCATGGCTACCCTGAGAGAAAAGCAAGCATTACTAAGACAAGTAGAAGATCAAATACAGGCCTTACAAGATGAATATGACAAAGGTGTAAATGAAAAAGAAAGCCTGG
Seq A exon
CAAAGACCATGGCCCTGACAAAAGCACGTCTAGTACGTGCTGGAAAGCTGACAGCAGCATTAGAAGATGAGCAGGTTCGATGGGAAGAAAGCATACAGAAGTTTGAGGAAGAAATATCAAATATCACTGGGAACGTGTTCATAGCAGCAGCTTGTGTGGCCTACTATGGGGCTTTCACAGCCCAGTACAGGCAGTCA
Seq C2 exon
CTTATAGAGTGTTGGATCCAGGACTGTCAGTCTCTGGAGATCCCAATCGATCCTTCCTTCAGTCTCATTAACATTCTTGGAGATCCCTACGAGATACGGCAGTGGAACACTGATGGGCTGCCCCGTGACTTGATATCAACAGAAAATGGCATTTTGGTTACTCAAGGCAGAAGATGGCCTTTGATGATTGATCCCCAAGATCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000115423-'73-77,'73-75,74-77=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.010
Domain overlap (PFAM):
C1:
PF127772=MT=FE(12.2=100)
A:
PF127772=MT=FE(19.4=100)
C2:
PF127772=MT=PD(2.1=10.3),PF127812=AAA_9=PU(18.6=63.2)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACCATGGCTACCCTGAGAGAA
R:
GATATCAAGTCACGGGGCAGC
Band lengths:
246-443
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains