MmuEX6004950 @ mm10
Exon Skipping
Gene
ENSMUSG00000052861 | Dnah6
Description
dynein, axonemal, heavy chain 6 [Source:MGI Symbol;Acc:MGI:107744]
Coordinates
chr6:73074573-73076693:-
Coord C1 exon
chr6:73076570-73076693
Coord A exon
chr6:73075663-73075859
Coord C2 exon
chr6:73074573-73074776
Length
197 bp
Sequences
Splice sites
3' ss Seq
ATGTTCTCAAAATCATCCAGCAA
3' ss Score
3.98
5' ss Seq
CTGGTGAGT
5' ss Score
10.1
Exon sequences
Seq C1 exon
GCTGAACTTGACGCTACAATGGCTACCCTGAAAGAAAAGCAAGCATTGCTGAAGCAAGTGGAAGATCAAATAAAGACTTTGCAAGACAAGTACGAGAAAGGAGTGAATGAGAAAGAAAGTCTGG
Seq A exon
CAAAGAACATGGCCCTGACCAAAGCGCGCCTGATACGTGCTGGAAAGCTAACGGCTGCATTAGGAGACGAGCAGGTTCGGTGGGAAGAAAGCATTGAGAAATTCCAGGAGGAGCTAGCAAACATCGTTGGAAACGTGTTCATAGCAGCAGCTTGCGTGGCTTATTACGGGGCTTTCACAGCCCAGTACAGGCAGCTG
Seq C2 exon
CTTATAGAGTGGTGGATTGAATCCTGCCTGGCCCTGGAGATCCCCATTGACCCCTCCTTCAGTCTCATTAACATTCTTGGTGACCCCTATGAAATCCGGCAGTGGAACACAGATGGACTGCCCAGAGACTTGATATCAACTGAGAATGGCATTTTGGTTACTCAGGGGAGAAGATGGCCTTTGATGATTGATCCTCAAGATCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000052861-'63-62,'63-60,64-62=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF127772=MT=FE(12.2=100)
A:
PF127772=MT=FE(19.4=100)
C2:
PF127772=MT=PD(2.1=10.3),PF127812=AAA_9=PU(18.6=63.2)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GACGCTACAATGGCTACCCTG
R:
TCAAGTCTCTGGGCAGTCCAT
Band lengths:
248-445
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types