DreEX0027510 @ danRer10
Exon Skipping
Gene
ENSDARG00000103383 | dnah9
Description
dynein, axonemal, heavy chain 9 [Source:ZFIN;Acc:ZDB-GENE-020925-1]
Coordinates
chr12:180567-182446:-
Coord C1 exon
chr12:182022-182446
Coord A exon
chr12:181338-181560
Coord C2 exon
chr12:180567-180733
Length
223 bp
Sequences
Splice sites
3' ss Seq
ATGTGTGATGTGTGTTTCAGTCT
3' ss Score
8.25
5' ss Seq
GAGGTCAGT
5' ss Score
7.7
Exon sequences
Seq C1 exon
GATGATATGGAGGACATGGAGGAGCTGGTGCAGACCCGTCAGCATGTGATGCAGCGAGTGAAGAGGATCATGATGAAGTGCTGCGAGTACCGGAACTCTCTGGAGCGCTACGCTTACCTGTACGTGGACGACCGCAAAGAGTTCATGCGTCAGTTCCTGCTGTACGGCCATGTGCTGACGAGCCAGGAGATCGAGGAGCACGCTGAACACGGCGTCCCAGAATCCCCTCCGACTCTAGAGCGCTTCCGGCAGCAGGTAGACTCCTACGAGCGTCTGTATGAGGAGCTGCAGCGGATGGAGCCTGTGATGGTGTTCGAGCGCTGGATGAGGGTGGACGCTCGCGCCTTCAAGAGCGCGCTGCTCAACACCGTCAAGAAGTGGAGCTTGATGTTCAAACAGCACCTCATCGACCACGTCACTAACAG
Seq A exon
TCTGTCTGACCTGGAGGAGTTCATCCGGCTGACTGAGGCCGGTCTGGGGCAGAAGGTGGAGGAGGGTGACTATAGAGGACTGGTGGAGATCATGGGTTTCCTGATGGCGGTGAAGGAGAGACAGAGCAGCACGGATGAGATGTTTGAGCCTCTGCAGCAAACCATTGACCTGCTCAAGACTTACGAGCAGGAGCTGCCGGATGTAGTCTACAAACAGCTGGAG
Seq C2 exon
GTGCTGCCGGAGAAGTGGAACAACATGAAGAAGCAGGCGGTGCAGGTGAAGCAGCATGTGGCTCCGCTGCAGGCCGCAGAGGTGGCTAACCTGCGCAGGAGATGTGCTGCGTTCGACGTGGAGCAACACACCTTCAGGGAGACCTTCCGCAAGAAACACTTCTTTAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000103383-'17-17,'17-16,18-17
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.106 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GTCTGTATGAGGAGCTGCAGC
R:
GGAAGGTCTCCCTGAAGGTGT
Band lengths:
302-525
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]