GgaEX6015787 @ galGal3
Exon Skipping
Gene
ENSGALG00000001111 | DNAH9
Description
NA
Coordinates
chr18:1036027-1040077:+
Coord C1 exon
chr18:1036027-1036451
Coord A exon
chr18:1037878-1038100
Coord C2 exon
chr18:1039911-1040077
Length
223 bp
Sequences
Splice sites
3' ss Seq
TGTGTGTTTATATTATATAGCTT
3' ss Score
6.33
5' ss Seq
GAGGTGAGT
5' ss Score
10.03
Exon sequences
Seq C1 exon
GCTGACATGGAGGACATGGCTGACCTGGCTGACATGCGCCACGACCTGCTGGGCCGCGTGCAGGCTGTGATGGCGGCCTGTTGTGAATACCGCAGCAGCTTCGATCGCTACTCTTACCTCTATGGGGATGACCGAAAGGAATTCTTCCGCCAGTTCCTTCTCTATGGGCACATCCTCACCGCTGCAGAAGTCGAGGCTCATGCAGAGGATGGGGTCCCTGAGACATCCCCCACCCTTGAGCAGTTCAGGGAGCAGATTGACTCCTATGAGAAGATTTATGAGGAGGTGAATCGCATCGAGCCCATCAGCATCTTCCACAGCTGGATGAAGGTCGACGCGCGGCCTTTCAAGGCGTCCTTGCTGAATGTGGTGAAAAGGTGGAGTTTGTTGTTCAAGCAGCATCTCATTGACCACGTCACACACAG
Seq A exon
CTTGACTGACCTTGAAGAGTTCATAAAAACTGCTGATGAAGGTCTGAGCAAAAAAGTTGAAAAAGGAGATTATGATGGCTTGGTGGAGATTATGGGTCATCTCATGGCCGTTAAAGAAAGGCAGAGTGTCACTGATGCCATGTTTGAGCCCCTGAAGCAAACCGTGGAGCTGCTGAAGGCGTATGAGCAACAGCTGCCCGAGGAAGTCCATAAGCAACTAGAG
Seq C2 exon
GAGCTGCCAGAAAAATGGAACAATATAAAGAAGCAGGCGATAGCTGTGAAGCAGCATGTGGCTCCTCTGCAGGCAAACGAAATGGCAGCTCTGCGCAGGAGCTGTGCGGCCTTTGATGCTGAGCAGCACAGATTCAGAGAGAGGTTTCGGAAAGAAGCTCCGTTCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000001111-'16-17,'16-16,17-17=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.049 A=0.027 C2=0.018
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Cow
(bosTau6)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CAGAAGTCGAGGCTCATGCAG
R:
CTTCACAGCTATCGCCTGCTT
Band lengths:
292-515
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]