RnoEX6047729 @ rn6
Exon Skipping
Gene
ENSRNOG00000004171 | Dnah9
Description
dynein, axonemal, heavy chain 9 [Source:RGD Symbol;Acc:621799]
Coordinates
chr10:52624891-52637224:-
Coord C1 exon
chr10:52636800-52637224
Coord A exon
chr10:52626092-52626314
Coord C2 exon
chr10:52624891-52625057
Length
223 bp
Sequences
Splice sites
3' ss Seq
TGTGCTTTGTGTTCTTCCAGCCT
3' ss Score
9.42
5' ss Seq
GAGGTCAGT
5' ss Score
7.7
Exon sequences
Seq C1 exon
GGTGACCTAGAGGAAATGGCTGACTTAGCCAGCCTTCGGAGCTTGCTCCTGGAGAGGGTGCAGACTATGATGACCCTCTGCTGTAGCTATCGGAATACCCTCAGCCAGTATTCTTATCTGTATGTGGAGGATAGGAAGGAGGCCCTTGGCCAGTTTCTGCTCTATGGGCATGTCCTCACACCTGAGGAGATAGAAGCCCATGTCGAAGATGGCATCCCAGAGAGTCCGCCCCTCCTCCATCACTTCAAAGACCAGATAGACTCCTATGAAAAGCTATATGAAGATGTGGTCAGCCTGGAACCCAGCAAGGTGTTTGACGGCTGGATGCGAGTGGATGTGAGACCCTTCAAGGCATCTCTGCTGAACACAATAAAGAAGTGGAGCCTCATGTTCAAGCAACATCTTGTTGACTTTGTCACTAACAG
Seq A exon
CCTGGCTGACCTTGACTCATTCATAAAGAGCACTGAGTGTGGTTTGCTCAAGAGGGTGGAAAAAGGAGATTTCCAGGGATTGGTTGAGATCATGGGACACCTTGTCACCCTTAAAGAACGGCAGAGCAGCACCGATGACATGTTTGAGCCCCTGAAGCAAACGATTGAACTGCTGAAGTCCTACGAACAAGAGCTGCCTGAAACTGTGTTTAAGCAACTGGAG
Seq C2 exon
GAACTTCCGGAGAAGTGGAAGAATGTGAAGAAGATGGCCATCACTGTGAGGCAGCAGGTGGCCCCTCTACAGGCAAATGAAGTGGCCCTCCTCCGCCAGCGGTGCTCAGCCTTTGATGATGAACAGCAGCAATTCCAGGAGAGGTTCCACAAAGAAGCTCCCTTCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000004171-'24-20,'24-19,25-20=AN
Average complexity
A_C1
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.007 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGATGGCATCCCAGAGAGTCC
R:
GGGCCACTTCATTTGCCTGTA
Band lengths:
307-530
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]