DreEX0027753 @ danRer10
Exon Skipping
Gene
ENSDARG00000009281 | dnm1b
Description
dynamin 1b [Source:ZFIN;Acc:ZDB-GENE-100920-3]
Coordinates
chr5:63048874-63049702:+
Coord C1 exon
chr5:63048874-63049071
Coord A exon
chr5:63049237-63049287
Coord C2 exon
chr5:63049666-63049702
Length
51 bp
Sequences
Splice sites
3' ss Seq
TCCATTTACACCCTTTACAGCCC
3' ss Score
7.71
5' ss Seq
TCAGTAACA
5' ss Score
-3.07
Exon sequences
Seq C1 exon
ATCTCCAATGTCTAGCCCCACTCCTCAACGCCGGGCCCCACCGGGACCCCCTCGTCCAGGTGGACGCACTGCTCCAGGACCCCCTACTATTGGTGCTCCTCCTGTGCCATCCAGACCCGGAGCCTCTCCAGACCCCTTCGGTGCCCCTCCACCACAGGTCCCCTCTCGTCCCAACCGTGCACCACCCGGTGTCCCCAG
Seq A exon
CCCTTCCGCCCTGACCTGATCCCTGGTCTTTATCACAAGAAAGACAGATCA
Seq C2 exon
AATTTCTATCAGTGACCAATGAGGAGTTACGCAAATG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000009281-'22-25,'22-24,23-25
Average complexity
C1
Mappability confidence:
88%=100=100%
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=1.000 A=1.000 C2=1.000
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Inclusion Isoform:
ENSDART00000134261fB2364
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Human
(hg19)
No conservation detected
Mouse
(mm10)
No conservation detected
Mouse
(mm9)
No conservation detected
Rat
(rn6)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTATTGGTGCTCCTCCTGTGC
R:
TGCGTAACTCCTCATTGGTCAC
Band lengths:
145-196
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]