DreINT0058795 @ danRer10
Intron Retention
Gene
ENSDARG00000009281 | dnm1b
Description
dynamin 1b [Source:ZFIN;Acc:ZDB-GENE-100920-3]
Coordinates
chr5:63048874-63049702:+
Coord C1 exon
chr5:63048874-63049071
Coord A exon
chr5:63049072-63049665
Coord C2 exon
chr5:63049666-63049702
Length
594 bp
Sequences
Splice sites
5' ss Seq
CAGGTGAGT
5' ss Score
10.67
3' ss Seq
ATTCCCCGTTATCCTTTCAGAAT
3' ss Score
10.47
Exon sequences
Seq C1 exon
ATCTCCAATGTCTAGCCCCACTCCTCAACGCCGGGCCCCACCGGGACCCCCTCGTCCAGGTGGACGCACTGCTCCAGGACCCCCTACTATTGGTGCTCCTCCTGTGCCATCCAGACCCGGAGCCTCTCCAGACCCCTTCGGTGCCCCTCCACCACAGGTCCCCTCTCGTCCCAACCGTGCACCACCCGGTGTCCCCAG
Seq A exon
GTGAGTCAGACATGATGTTTATCAATACAGTTATAATAATACTATCTATCATTAATGTTATAACGTGTAATTGGTTCAAATAATGCATTTATGGGGAGTAATGGAAATGTCAATATTGTTGAGAGTAATGATCTACAAACTACCCTCCATTTACACCCTTTACAGCCCTTCCGCCCTGACCTGATCCCTGGTCTTTATCACAAGAAAGACAGATCAGTAACACTCTTCCTTCTATTTCTACTTCTCTCTCCTGTCACACTCCATTACTTTTGCTCAGCTCACACACTCCTACACAGTCCAACTCAGAGACCTGCACTAACACACCACTCACGCATTTCACTGACTCTCCTCCATGTGCATGTTCACTCCAGTGTTGCGTTAACTCATTCTGTTCATTGTATAATTGTTTGTATCTAAAGAAGCATCAACTTTGTGAGATCATTCTCTCATGATATACATGTTTGGGAGGAATTAAAAGGGAAAAAAACGTTAAGAGTGATTCATTTGTCGTTTCATCCGGCTGCCTCTTTTTTCTGTCGATGTGTTCTCCTCAAACTAAATCCCTTCTACAATGATTCCCCGTTATCCTTTCAG
Seq C2 exon
AATTTCTATCAGTGACCAATGAGGAGTTACGCAAATG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000009281:ENSDART00000134261:21
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=1.000 A=NA C2=1.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Rat
(rn6)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TCTCCAATGTCTAGCCCCACT
R:
TGCGTAACTCCTCATTGGTCAC
Band lengths:
230-824
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]