DreEX0027759 @ danRer10
Exon Skipping
Gene
ENSDARG00000009281 | dnm1b
Description
dynamin 1b [Source:ZFIN;Acc:ZDB-GENE-100920-3]
Coordinates
chr5:63048874-63060137:+
Coord C1 exon
chr5:63048874-63049071
Coord A exon
chr5:63049666-63049702
Coord C2 exon
chr5:63056475-63060137
Length
37 bp
Sequences
Splice sites
3' ss Seq
ATTCCCCGTTATCCTTTCAGAAT
3' ss Score
10.47
5' ss Seq
ATGGTATGT
5' ss Score
8.35
Exon sequences
Seq C1 exon
ATCTCCAATGTCTAGCCCCACTCCTCAACGCCGGGCCCCACCGGGACCCCCTCGTCCAGGTGGACGCACTGCTCCAGGACCCCCTACTATTGGTGCTCCTCCTGTGCCATCCAGACCCGGAGCCTCTCCAGACCCCTTCGGTGCCCCTCCACCACAGGTCCCCTCTCGTCCCAACCGTGCACCACCCGGTGTCCCCAG
Seq A exon
AATTTCTATCAGTGACCAATGAGGAGTTACGCAAATG
Seq C2 exon
CCGTCCGAGCAAAGGAAGCCCTTCTCACAGTGAGAGTCCACAACCTTCGTTTGACTCTTAGAGTCAATTGTCCTTCCTCTCCATCCTCGTTTCTCTCTCTCTTTCTCTGTCTCTCCTCTGACCAAGTGCATCATGGGATCGATGCGTTGGCATCTGAAACAGCAGGTATGGATGGAAGGAAGAATGCAGGACAACACTTTGTACTATACTCACTACAAACATCATCACGGGCCTCTGAATAATGAGCCCAATGTGGACTTTTGTCACCGCAGTGTTAACTATATCCTGAAGATGCTGTGTGTGGTGTTCGTGTTTACACACTACTAGATAATGTCGACTATTATAGAGTTTTGAAATGAGCTAAAAGTGTATCTTCACGGGTGAATACACAATATAAGATGTATGATTTTTTTTTTTGCACTTGTTATGTGGTACTTAATGTATGAATGTATTAGCCCTGAAAGTTTGGATGTTATTTGATCCCACAGTGTGTGTTTCGA
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000009281_CASSETTE3
Average complexity
S*
Mappability confidence:
100%=100=50%
Protein Impact
Alternative protein isoforms (Ref, Alt. Stop)
No structure available
Features
Disorder rate (Iupred):
C1=1.000 A=1.000 C2=1.000
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GAGCCTCTCCAGACCCCTTC
R:
TCACTGTGAGAAGGGCTTCCT
Band lengths:
112-149
Functional annotations
There are 1 annotated functions for this event
PMID: 21689596
Partially encodes an experimentally validated Eukaryotic Linear Motif (ELM). Method: competition binding, glutathione s tranferase tag, mutation analysis, pull down. ELM ID: ELMI002614; ELM sequence: VPRITIS; Overlap: PARTIAL_LEFT
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]