DreEX0028217 @ danRer10
Exon Skipping
Gene
ENSDARG00000027750 | dpp7
Description
dipeptidyl-peptidase 7 [Source:ZFIN;Acc:ZDB-GENE-050306-16]
Coordinates
chr5:28564172-28571783:+
Coord C1 exon
chr5:28564172-28564338
Coord A exon
chr5:28564599-28564659
Coord C2 exon
chr5:28571665-28571783
Length
61 bp
Sequences
Splice sites
3' ss Seq
TTGCTTTTTTATTTTCACAGGTG
3' ss Score
10.61
5' ss Seq
TTGGTAAAT
5' ss Score
4.94
Exon sequences
Seq C1 exon
ACTACATCCGCATCCAGTCTGCTTTCTCTCTGTGTAAAACTCCCTCCTCTCCAAAGGACATTCATCAGCTGAACGGATTCTTACGTAACGCCTTCACCATGATGGCCATGTTGGATTATCCCTACAGCACTCATTTCATGGGCAGCATGCCAGCCTTTCCTGTAAAG
Seq A exon
GTGGCGTGTGAAATTATGCTGAATGGCACTGATCTAATGTCTGCGCTCAGAGATACTGTTG
Seq C2 exon
GCATTGTGTATAATAACACCGGAGAGCTGACATGTTATGACCTCTACAGTCTCTATGTGGAGTGCGCTGACCCCACCGGCTGTGGCCTGGGCTTTAACAGCTATGCATGGGATTATCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000027750-'12-12,'12-10,13-12
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF055777=Peptidase_S28=FE(12.9=100)
A:
PF055777=Peptidase_S28=FE(4.7=100)
C2:
PF055777=Peptidase_S28=FE(9.1=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACAGCACTCATTTCATGGGCA
R:
CTGTTAAAGCCCAGGCCACAG
Band lengths:
144-205
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]