MmuEX6099483 @ mm10
Exon Skipping
Gene
ENSMUSG00000026958 | Dpp7
Description
dipeptidylpeptidase 7 [Source:MGI Symbol;Acc:MGI:1933213]
Coordinates
chr2:25353608-25354634:-
Coord C1 exon
chr2:25354468-25354634
Coord A exon
chr2:25354233-25354293
Coord C2 exon
chr2:25353608-25353726
Length
61 bp
Sequences
Splice sites
3' ss Seq
ATTCTGCTGCCTTTCTCTAGGTG
3' ss Score
11.61
5' ss Seq
CAGGTGGGT
5' ss Score
8.56
Exon sequences
Seq C1 exon
CCTATGACACCATCAGCCAGAACTTTGGTACCTGTCAATCACTTTCCAGCCCAAAGGACCTGACTCAGCTCTTTGGGTTTGCCCGAAATGCATTTACTGTGCTCGCCATGATGGACTACCCGTATCCTACTGACTTTCTAGGGCCCCTTCCTGCCAACCCTGTCAAG
Seq A exon
GTGGGCTGTCAACGGCTGTTGAATGAGGGCCAGAGGATCATGGGTCTACGGGCACTGGCAG
Seq C2 exon
GGCTGGTCTACAACTCCTCTGGCACGGAACCCTGTTATGACATCTACCGGTTATACCAAAGCTGTGCTGACCCCACTGGCTGTGGCACTGGCTCTGACGCTAGGGCTTGGGACTACCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000026958-'12-14,'12-10,13-14
Average complexity
C1
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF055777=Peptidase_S28=FE(12.9=100)
A:
PF055777=Peptidase_S28=FE(4.7=100)
C2:
PF055777=Peptidase_S28=FE(9.1=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACCTGACTCAGCTCTTTGGGT
R:
TTCCGTGCCAGAGGAGTTGTA
Band lengths:
139-200
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types