RnoEX0029666 @ rn6
Exon Skipping
Gene
ENSRNOG00000012640 | Dpp7
Description
dipeptidylpeptidase 7 [Source:RGD Symbol;Acc:71073]
Coordinates
chr3:2570424-2571536:-
Coord C1 exon
chr3:2571370-2571536
Coord A exon
chr3:2571153-2571213
Coord C2 exon
chr3:2570424-2570542
Length
61 bp
Sequences
Splice sites
3' ss Seq
CTGCTGCCCTTCTCTTCTAGGTG
3' ss Score
13.43
5' ss Seq
CAGGTGAGT
5' ss Score
10.67
Exon sequences
Seq C1 exon
CCTATGACACCATCAGCCAGAATTTTGGGACCTGCCAATCACTTTCCAGCCCAAAGGACCTGACTCAGCTCTTTGGGTTTGCCCGGAATGCATTTACTGTTCTCGCCATGATGGATTACCCGTACCCTACTAACTTTCTAGGGCCCCTTCCTGCCAACCCTGTCAAG
Seq A exon
GTGGGCTGTGAACGGTTGTTGAGTGAGGGCCAGAGGATCATGGGTCTACGGGCACTGGCAG
Seq C2 exon
GGCTGGTCTACAACTCCTCTGGCATGGAACCCTGTTTTGACATCTACCAGATGTACCAAAGCTGTGCTGACCCCACTGGCTGTGGCACTGGCTCCAATGCCAGGGCCTGGGACTACCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000012640-'11-22,'11-17,12-22
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF055777=Peptidase_S28=FE(12.9=100)
A:
PF055777=Peptidase_S28=FE(4.7=100)
C2:
PF055777=Peptidase_S28=FE(9.1=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACCTGACTCAGCTCTTTGGGT
R:
GGTTCCATGCCAGAGGAGTTG
Band lengths:
141-202
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]