DreEX0028218 @ danRer10
Exon Skipping
Gene
ENSDARG00000027750 | dpp7
Description
dipeptidyl-peptidase 7 [Source:ZFIN;Acc:ZDB-GENE-050306-16]
Coordinates
chr5:28564599-28574089:+
Coord C1 exon
chr5:28564599-28564659
Coord A exon
chr5:28571665-28571783
Coord C2 exon
chr5:28573933-28574089
Length
119 bp
Sequences
Splice sites
3' ss Seq
CATTTTGTGTTCTCCCACAGGCA
3' ss Score
11.95
5' ss Seq
CAGGTAACC
5' ss Score
8.66
Exon sequences
Seq C1 exon
GTGGCGTGTGAAATTATGCTGAATGGCACTGATCTAATGTCTGCGCTCAGAGATACTGTTG
Seq A exon
GCATTGTGTATAATAACACCGGAGAGCTGACATGTTATGACCTCTACAGTCTCTATGTGGAGTGCGCTGACCCCACCGGCTGTGGCCTGGGCTTTAACAGCTATGCATGGGATTATCAG
Seq C2 exon
GCCTGCACCGAGATCGAGATGTGCTTTGAGAGCAACAATGTGACAGACATGTTTCCGGCCATGCCGTTCACTGAGCAGCAGAGGGAGCAGTACTGCTCAAACAGATGGGGAGTTGTGCCACGGCCAGGGTGGCTGAAGACACAGTTCTGGGGCAATG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000027750-'13-13,'13-12,17-13
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.019
Domain overlap (PFAM):
C1:
PF055777=Peptidase_S28=FE(4.7=100)
A:
PF055777=Peptidase_S28=FE(9.1=100)
C2:
PF055777=Peptidase_S28=FE(12.1=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GTGGCGTGTGAAATTATGCTGA
R:
CATTGCCCCAGAACTGTGTCT
Band lengths:
218-337
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]