GgaEX6014636 @ galGal4
Exon Skipping
Gene
ENSGALG00000009105 | DPP7
Description
dipeptidyl-peptidase 7 [Source:HGNC Symbol;Acc:HGNC:14892]
Coordinates
chr17:319087-325952:+
Coord C1 exon
chr17:319087-319147
Coord A exon
chr17:325597-325715
Coord C2 exon
chr17:325796-325952
Length
119 bp
Sequences
Splice sites
3' ss Seq
GTGCTCTTCCCACTTGGCAGGCG
3' ss Score
6.41
5' ss Seq
CAGGTGAGG
5' ss Score
10.07
Exon sequences
Seq C1 exon
GTTGGCTGTGAACAAATCCTTGCCCACACAGACCCTATTCAAGGCCTGGCAGCTCTTGTTG
Seq A exon
GCGTGTTCTACAACTCCTCTGGCTCAGCGCAGTGCTATGATGTGTACCGACTGTACCGGCCCTGCGCCGACCCCACGGGCTGCGGCACCGGCGCGGATGCTGAGGCCTGGGACTACCAG
Seq C2 exon
GTGTGTACCGAGATCAACTTAACTTTCAACAGCAACAACGTGACAGACATGTTCCCTGAGATGCCCTTCACAGAGGCCATGAGAGAGCAGTACTGTTGGAGCCGATGGCGCGTGAGGCCGCGAGCGCAGTGGCTGCGGATCAACTTCTGGGGAGGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000009105-'13-19,'13-18,16-19=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF055777=Peptidase_S28=FE(4.7=100)
A:
PF055777=Peptidase_S28=FE(9.1=100)
C2:
PF055777=Peptidase_S28=FE(12.1=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GTTGGCTGTGAACAAATCCTTGC
R:
CTCCTCCCCAGAAGTTGATCC
Band lengths:
218-337
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]