HsaEX6064209 @ hg19
Exon Skipping
Gene
ENSG00000176978 | DPP7
Description
dipeptidyl-peptidase 7 [Source:HGNC Symbol;Acc:14892]
Coordinates
chr9:140006325-140007257:-
Coord C1 exon
chr9:140007197-140007257
Coord A exon
chr9:140006564-140006682
Coord C2 exon
chr9:140006325-140006481
Length
119 bp
Sequences
Splice sites
3' ss Seq
CCAGCGCCTCTCCTCCCCAGGGC
3' ss Score
8.92
5' ss Seq
CAGGTGTGG
5' ss Score
6.34
Exon sequences
Seq C1 exon
GTGGGCTGTGATCGGCTGCTGAGTGAGGCCCAGAGGATCACGGGGCTGCGAGCACTGGCAG
Seq A exon
GGCTGGTCTACAACGCCTCGGGCTCCGAGCACTGCTACGACATCTACCGGCTCTACCACAGCTGTGCTGACCCCACTGGCTGCGGCACCGGCCCCGACGCCAGGGCCTGGGACTACCAG
Seq C2 exon
GCCTGCACCGAGATCAACCTGACCTTCGCCAGCAACAATGTGACCGATATGTTCCCGGACCTGCCCTTCACTGACGAGCTCCGCCAGCGGTACTGCCTGGACACCTGGGGCGTGTGGCCCCGGCCCGACTGGCTGCTGACCAGCTTCTGGGGGGGTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000176978-'14-25,'14-22,19-25=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF055777=Peptidase_S28=FE(4.7=100)
A:
PF055777=Peptidase_S28=FE(9.1=100)
C2:
PF055777=Peptidase_S28=FE(12.1=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GTGGGCTGTGATCGGCTG
R:
CTGGTCAGCAGCCAGTCG
Band lengths:
204-323
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)