DreEX0028431 @ danRer10
Exon Skipping
Gene
ENSDARG00000022309 | dspa
Description
desmoplakin a [Source:ZFIN;Acc:ZDB-GENE-030131-2743]
Coordinates
chr2:1791569-1796498:+
Coord C1 exon
chr2:1791569-1791628
Coord A exon
chr2:1793981-1794148
Coord C2 exon
chr2:1796394-1796498
Length
168 bp
Sequences
Splice sites
3' ss Seq
ATCATTTCTTTATTTAATAGAAA
3' ss Score
7.03
5' ss Seq
TCGGTGAGG
5' ss Score
8.99
Exon sequences
Seq C1 exon
ATGCAGAGCAGGGAAAAGGCTGGACTACATGCTCTGGACCAAGAGTGGGACAGTTTACAG
Seq A exon
AAAATGTCCCATGCACGTATGGATCATCTGCGAGACCTACAGAGCATCATCGAGGAGATTTCCAGAGCCATCATGTGGGTCAACGACAGAGAGGAGGAGGAGCTGGTGTTTGACTGGGGCGATAAAAACATTGACAACTACATCCCTCAAAAACAAGAGAGCTACTCG
Seq C2 exon
AAACTGATGAGTGATCTGGAGGAGAAGGAGAAAGAGCTGAATAAGCTAAAGGCAAAGGTGGACATGCTGCTGAAGAACCAGCACCCGGCATCTGATAAGATAGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000022309-'5-8,'5-7,7-8
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.150 A=0.000 C2=0.143
Domain overlap (PFAM):
C1:
NO
A:
PF0043516=Spectrin=PU(41.0=76.8)
C2:
PF0043516=Spectrin=FE(32.4=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ATGCAGAGCAGGGAAAAGGC
R:
TATCTTATCAGATGCCGGGTGC
Band lengths:
162-330
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]