GgaEX6020308 @ galGal4
Exon Skipping
Gene
ENSGALG00000012790 | DSP
Description
desmoplakin [Source:HGNC Symbol;Acc:HGNC:3052]
Coordinates
chr2:64632253-64634378:-
Coord C1 exon
chr2:64634328-64634378
Coord A exon
chr2:64633328-64633489
Coord C2 exon
chr2:64632253-64632357
Length
162 bp
Sequences
Splice sites
3' ss Seq
CATTTTGGAATTCCTTGCAGAAA
3' ss Score
7.83
5' ss Seq
TCTGTAAGA
5' ss Score
4.08
Exon sequences
Seq C1 exon
CGTGAGAAGGCTGCCGTTCACCAGCTGGAGGAAGAATACGAAGGACTGCTG
Seq A exon
AAATACTCCTTTGAGAGAATGGATCAGCTCCGTCAATTCCAGAACCTTATCCAAGCAACCAGCAGAGAGATCATGTGGATCAATGACTGTGAGGAAGAAGAGCTTCTCTACGACTGGAGCGACAGGAACACAGATATCTCCAGGAAGCAGGAGGCCTTCTCT
Seq C2 exon
AAACGTATGAGTGAACTGGAGCTTAAAGAAAAAGAACTCAACAAGCTAAAGCAAGAAAGTGACCAGCTTGTGCTCAACCAGCACCCTGCTTCAGACAAAATTGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000012790-'6-6,'6-5,7-6=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.009 C2=0.029
Domain overlap (PFAM):
C1:
PF0043516=Spectrin=FE(15.0=100)
A:
PF0043516=Spectrin=PD(26.2=51.9)
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CGTGAGAAGGCTGCCGTTC
R:
CAATTTTGTCTGAAGCAGGGTGC
Band lengths:
154-316
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]