HsaEX6045702 @ hg19
Exon Skipping
Gene
ENSG00000096696 | DSP
Description
desmoplakin [Source:HGNC Symbol;Acc:3052]
Coordinates
chr6:7563969-7566714:+
Coord C1 exon
chr6:7563969-7564019
Coord A exon
chr6:7565592-7565753
Coord C2 exon
chr6:7566610-7566714
Length
162 bp
Sequences
Splice sites
3' ss Seq
CCTTTGAACCTCCTGTGCAGAAA
3' ss Score
7.43
5' ss Seq
TCCGTAAGT
5' ss Score
10.27
Exon sequences
Seq C1 exon
CGCGAGAAATCTGCTATCTACCAGTTGGAGGAGGAGTATGAAAACCTGCTG
Seq A exon
AAAGCGTCCTTTGAGAGGATGGATCACCTGCGACAGCTGCAGAACATCATTCAGGCCACGTCCAGGGAGATCATGTGGATCAATGACTGCGAGGAGGAGGAGCTGCTGTACGACTGGAGCGACAAGAACACCAACATCGCTCAGAAACAGGAGGCCTTCTCC
Seq C2 exon
ATACGCATGAGTCAACTGGAAGTTAAAGAAAAAGAGCTCAATAAGCTGAAACAAGAAAGTGACCAACTTGTCCTCAATCAGCATCCAGCTTCAGACAAAATTGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000096696-'5-7,'5-6,6-7=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0043516=Spectrin=FE(17.2=100)
A:
PF0043516=Spectrin=PD(12.9=22.2),PF0043516=Spectrin=PU(41.0=79.6)
C2:
PF0043516=Spectrin=FE(32.4=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CGCGAGAAATCTGCTATCTACCA
R:
TCAATTTTGTCTGAAGCTGGATGC
Band lengths:
155-317
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)