DreEX0032793 @ danRer10
Exon Skipping
Gene
ENSDARG00000063682 | fhod3a
Description
formin homology 2 domain containing 3a [Source:ZFIN;Acc:ZDB-GENE-060503-633]
Coordinates
chr19:737478-739670:+
Coord C1 exon
chr19:737478-737545
Coord A exon
chr19:737991-738096
Coord C2 exon
chr19:739576-739670
Length
106 bp
Sequences
Splice sites
3' ss Seq
GTGTGTGTGTGTGTGTGTAGGAT
3' ss Score
9.82
5' ss Seq
GAGGTTGCC
5' ss Score
-4.57
Exon sequences
Seq C1 exon
AGAAGCTGTATAACTCTAATGGCCGTGACCTGAGGAGGGCGCTGTTTTCCCTTAAACAGATATTCCAG
Seq A exon
GATGATAAAGACCTGGTCCATGAGTTTGTGATGGCTGAAGGACTGACGTGTTTAATTAAAGTGGGCGCTGAAGCGGATCAGAACTATCAGAACTACATCCTCAGAG
Seq C2 exon
CTCTGGGTCAGATCATGCTGTATGTGGACGGTATGAACGGGGTCATAGGTCACAACGAGTCTATCCAGTGGCTCTACCAGCTCATTGGCTCAAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000063682-'4-9,'4-7,5-9
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF063718=Drf_GBD=FE(18.0=100)
A:
PF063718=Drf_GBD=FE(28.7=100)
C2:
PF063718=Drf_GBD=FE(25.4=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GAAGCTGTATAACTCTAATGGCCGT
R:
CTTTGAGCCAATGAGCTGGTAGA
Band lengths:
162-268
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]