DreEX0033929 @ danRer10
Exon Skipping
Gene
ENSDARG00000014967 | g6pcb
Description
glucose-6-phosphatase b, catalytic subunit [Source:ZFIN;Acc:ZDB-GENE-081223-2]
Coordinates
chr3:32776517-32781073:-
Coord C1 exon
chr3:32780749-32781073
Coord A exon
chr3:32777083-32777182
Coord C2 exon
chr3:32776517-32776632
Length
100 bp
Sequences
Splice sites
3' ss Seq
CTTTCTGTCCGCTCTTCTAGGAA
3' ss Score
12.87
5' ss Seq
ATGGTGAAG
5' ss Score
1.69
Exon sequences
Seq C1 exon
GTTATCACTGGGAAGGCAAAACGGATTCAAGACACTAGATGTTATCCAAAGACTGAGAACAAAAATGAGCATCAGTAATGTTGCTCTATAGCAGATCAGCTGCAATAATGGAAGTATTGTATGGTTATGGGATAAGTAGCACATTATACCTGCAGAAGCATTTTGGGCACGCTCAAAGCTGGTTTACCTTTGTGTCAACAATAGCAGACCTGCGGACAACATTTTTATTTTTTTTCCCCATTTGGTTCCACCTACAATCAGCAGTGGGAGTCAAGCTAGTCTGGGTTGCTGTTGTAGGAGACTGGCTCAACTTAGTTCTTAAGTG
Seq A exon
GAAGCCCCTCGGGACATGCAATGGGCGCTGCAGGGGTCTACTATGCCATGGTTACGTCACTGCTGCTGAATTTCAAGGAGTGTGACCCTCTGAAAAGATG
Seq C2 exon
GTGCTTGCAGGCTCTTCTTTGGGCTGTTTTCTGGAGTGTGCAGGTGTGTGTCAGTCTTTCTCGAGTCTTCATTGCTGCTCATTTCCCACATCAGGTCATTGCTGGAGTTTTTTCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000014967_MULTIEX1-2/2=C1-C2
Average complexity
C2
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0156916=PAP2=PU(15.5=27.7)
A:
PF0156916=PAP2=FE(22.3=100)
C2:
PF0156916=PAP2=FE(26.4=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCACGCTCAAAGCTGGTTTAC
R:
TGATGTGGGAAATGAGCAGCA
Band lengths:
252-352
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]