DreINT0070788 @ danRer10
Intron Retention
Gene
ENSDARG00000014967 | g6pcb
Description
glucose-6-phosphatase b, catalytic subunit [Source:ZFIN;Acc:ZDB-GENE-081223-2]
Coordinates
chr3:32776517-32777182:-
Coord C1 exon
chr3:32777083-32777182
Coord A exon
chr3:32776633-32777082
Coord C2 exon
chr3:32776517-32776632
Length
450 bp
Sequences
Splice sites
5' ss Seq
ATGGTGAAG
5' ss Score
1.69
3' ss Seq
GCTTGTGCCTTATACTGTAGGTG
3' ss Score
8.5
Exon sequences
Seq C1 exon
GAAGCCCCTCGGGACATGCAATGGGCGCTGCAGGGGTCTACTATGCCATGGTTACGTCACTGCTGCTGAATTTCAAGGAGTGTGACCCTCTGAAAAGATG
Seq A exon
GTGAAGGACTCTGTTCTGTTTATCCTCCCACTTCCTTTTAATCTAGTATTGAGTAGGACTTCATTTGTAAAAGAATACCTGAATGAATGCATGGAAATGCCCTTAAGCAACAAGAAATCCTTCTTAACAATCTCTGATATAAAGAGGAAGGAAGGAACATATGCGGGCTTTGTCTTAGGAATACCAAATCATATCATGAACAACAGTATCTTTGCAGGCTGGGCCCCCTGTCAAAAGGAAATTTCTCATTAGTACTTGTGGGCTCATTTATCTTAGATCTGTTTTTTCCTCGCTTCAGGTTGAATATTGTACACAGGCAGTTTATTTTTGGGTGGATGATGGGCCCATTACTCAAATATTCTGAAAAAACAATGAAAGACCTGATCATTGCTTTACTTTTTAATATTAACAACTTTGCTTTATCGTATGTGCTTGTGCCTTATACTGTAG
Seq C2 exon
GTGCTTGCAGGCTCTTCTTTGGGCTGTTTTCTGGAGTGTGCAGGTGTGTGTCAGTCTTTCTCGAGTCTTCATTGCTGCTCATTTCCCACATCAGGTCATTGCTGGAGTTTTTTCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000014967:ENSDART00000156149:3
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0156916=PAP2=FE(22.3=100)
A:
NA
C2:
PF0156916=PAP2=FE(26.4=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCCTCGGGACATGCAATGG
R:
AAAACTCCAGCAATGACCTGATGT
Band lengths:
206-656
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]