DreEX0036614 @ danRer10
Exon Skipping
Gene
ENSDARG00000069538 | gtf3c4
Description
general transcription factor IIIC, polypeptide 4 [Source:ZFIN;Acc:ZDB-GENE-041008-147]
Coordinates
chr21:17380076-17384518:-
Coord C1 exon
chr21:17382797-17384518
Coord A exon
chr21:17382432-17382562
Coord C2 exon
chr21:17380076-17380164
Length
131 bp
Sequences
Splice sites
3' ss Seq
TTGATGTTTGACCTTTACAGGTG
3' ss Score
10.11
5' ss Seq
CAGGTACAG
5' ss Score
8.68
Exon sequences
Seq C1 exon
GTCTCTTTAGAAACTCTGATTTGCTGGATTTGTTACGATGGCGGATACTAAAAGACAAAAGCATCCCTTCGGCCTACGAGAATAATCTAGAAGAGAAGCTGCAAACCTCAGGGTCCACTTACCTGTGGCGTCTTAAGCTTTTCTTTCTCAGAACGCTTCACAAGTCCATGCAGAAAACTCCTTCAGAGGCTCTGTGGCAGCCAAGGCGAAGAAGTGGTCAGAGTTTAGTTGGTGATGGTGATGAAGGGGGTGGAGGTGATGAAGATGAGATGATGGAGGACAGACAGGGGGATGCAGAAATTAGGGAAAGAGAGGAGAGAATGAAAGAGATTGGCAGCAGGATCGAAGCTGTGGAGTCCCATCTGATCCGGGAGAACATGAAGAAGGTGCTGGGCGAGGTGTATCTGCACACCTGTGTCACTCAAAACACACGTGTACCCACTAAAGGTGTGTGTGACTTCCTCACAAATGACCCTGCTAATGAAGACAGGGCAGCCAAG
Seq A exon
GTGCTGATAGGTCATATCATGAATAAGATGAATAAACAGACATTTCCAGAGTATTGCGCTCTCTGTAAAGAAACTCTGCCCTTCACCGACTGCAAGCGGGCAGAGTGCAAGAATGGACACAGGTGGCTCAG
Seq C2 exon
GTGTGCGCTGTCATATCAGGCCTGTCAGGGTGTGACATACCGCCGCTGTCTATTGCAGGACAGTATTGCCTCAGTAGCAGAGCCTGAGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000069538_CASSETTE1
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.097 A=0.000 C2=0.032
Domain overlap (PFAM):
C1:
PF126572=TFIIIC_delta=PD(82.9=22.8)
A:
PF126602=zf-TFIIIC=PU(43.3=88.6)
C2:
PF126602=zf-TFIIIC=FE(33.3=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ATGATGGAGGACAGACAGGGG
R:
GACAGGCCTGATATGACAGCG
Band lengths:
257-388
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]