GgaEX1027805 @ galGal4
Exon Skipping
Gene
ENSGALG00000026104 | GTF3C4
Description
general transcription factor IIIC, polypeptide 4, 90kDa [Source:HGNC Symbol;Acc:HGNC:4667]
Coordinates
chr17:6637285-6641353:+
Coord C1 exon
chr17:6637285-6639105
Coord A exon
chr17:6640530-6640660
Coord C2 exon
chr17:6641265-6641353
Length
131 bp
Sequences
Splice sites
3' ss Seq
TGACTGCTGTGTATTCCCAGGTG
3' ss Score
9.12
5' ss Seq
CAGGTAATC
5' ss Score
6.99
Exon sequences
Seq C1 exon
CACTGGATAAAAAGATTGAGAGCTGTGGTTCTACTTATTTCTGGCGGTTTAAGCTGTTTCTCCTGAGGATTTTATACCAGTCAATGCAGAAAGCTCCCTCAGAGGTGATGTGGAAACCTTCACACGAGGATGCAAAAATACTGATATCTGATTCCCCTGGAATGGGCAGCACTGAAGATGATCAAGAGGAAGGAACTTCTAAACAAGCCAGCAAGCAGAGCCTATGTGACACGGGCAAAGGTATGGACATAGATGACACTGCAGATGATTCTCTTCCTCAGTCGAGTGACATAGGAGGCCGCGAGCCAATGGAAGAAAAGCTTCTTGAAATACAGGCACAAATTGAGGCAGTAGAAATGCACTTGACACGAGAACACATGAAACGGGTGTTGGGAGAAGTTTATCTACACACATGGATTACAGAAAACACCAGTATTCCCACCAGAGGAGTCTGTGATTTCTTAATGTCCGATGATGGATATGATGACAGAACAGCACGA
Seq A exon
GTGCTGATTGGGCATATCTTAAAGAAAATGAACAAACAGACTTTTCCAGAGCACTGCAGCTTGTGCAAGGAGATCTTGCCGTTCACTGACCGCAAACAGGCAGTCTGCTCCAATGGACATATTTGGCTCAG
Seq C2 exon
GTGCTTTCTAACCTACCAGTCCTGTCAGAGTTTGGTATACAGAAGATGTTTGCTTCATGACAGCATTGCACGGCATCCGACCCCAGAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000026104_MULTIEX1-2/2=1-C2
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.099 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF126572=TFIIIC_delta=PD(69.1=22.1)
A:
PF126602=zf-TFIIIC=PU(42.7=86.4)
C2:
PF126602=zf-TFIIIC=FE(33.7=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACAGGCACAAATTGAGGCAGT
R:
CCGTGCAATGCTGTCATGAAG
Band lengths:
242-373
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]