RnoEX0040557 @ rn6
Exon Skipping
Gene
ENSRNOG00000054725 | Gtf3c4
Description
general transcription factor IIIC subunit 4 [Source:RGD Symbol;Acc:1592609]
Coordinates
chr3:7409946-7417673:-
Coord C1 exon
chr3:7415847-7417673
Coord A exon
chr3:7412767-7412897
Coord C2 exon
chr3:7409946-7410034
Length
131 bp
Sequences
Splice sites
3' ss Seq
CACCTGGGATGTCTTACCAGGTC
3' ss Score
6.53
5' ss Seq
CCGGTAAGC
5' ss Score
8.8
Exon sequences
Seq C1 exon
AAAAAAAGATTGAAAGCAGTGGGGTTACCTATTTTTGGCGTTTTAAGCTTTTCCTCCTAAGGATTTTGTATCAGTCAATGCAGAAATCCCCATCCGAGGCCTTATGGAAACCCACCCATGAGGACTCAAAAATCTTACTGGTTGACTCACCTGGGATGGGCGATGGTGAGGATGAGCAGCAAGAGGAAGGTACTTCCAAGCAGGGGACGAAGGCTGGCCTGCAGGAGAAGAGCAAAGAGGGTGGTGACACGGAGGAGACTCCTGAGGATTCACTCACTGCCGTGGGAGACACCGGAGGCCGTGAACCCATAGAGGAGAAGCTCCTTGAGATCCAAGGGAAGATTGAGGCTGTGGAGATGCACCTGACCAGGGAGCACATGAAGCGGGTCCTCGGAGAAGTGTACCTGCACACCTGGATCACGGAGAACACCAGCATCCCCACCAGAGGGCTCTGCAACTTTCTCATGTCTGATGAAGATTATGATGACAGAACAGCACAG
Seq A exon
GTCTTGATTGGACATATCTCCAAGAAGATGAACAAGCAGACCTTCCCTGAGCGCTGCAGTCTGTGTAAGGAGATCTTACCATTCACAGATCGCAAGCAAGCTGTTTGTTCCAATGGGCACATCTGGCTCCG
Seq C2 exon
GTGCTTTCTAACCTACCAGTCCTGCCAGAGCTTGATCTACAGGCGGTGTTTGCTCCATGACAGCATCGCCAGGCACCCTGTTCCAGAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000054725_MULTIEX1-2/2=1-C2
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.099 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF126572=TFIIIC_delta=PD(69.1=22.0)
A:
PF126602=zf-TFIIIC=PU(43.3=88.6)
C2:
PF126602=zf-TFIIIC=FE(33.3=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCCGTGAACCCATAGAGGAGA
R:
ACCGCCTGTAGATCAAGCTCT
Band lengths:
250-381
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]