DreEX0038331 @ danRer10
Exon Skipping
Gene
ENSDARG00000058030 | hspa14
Description
heat shock protein 14 [Source:ZFIN;Acc:ZDB-GENE-041210-73]
Coordinates
chr4:9592851-9594287:+
Coord C1 exon
chr4:9592851-9592956
Coord A exon
chr4:9593034-9593124
Coord C2 exon
chr4:9594183-9594287
Length
91 bp
Sequences
Splice sites
3' ss Seq
TCATTTCATGTTCCCTGCAGAAA
3' ss Score
9.76
5' ss Seq
CAGGTATAT
5' ss Score
7.88
Exon sequences
Seq C1 exon
GTTGTCAACAAGAGTGGCCTTCCCAGATATGAAATCGACACCGGAGAGACGACCAAATATGTGTCCCCTGAAGACGTCGCTAAATTGATCTTCCATAAAATGAAAG
Seq A exon
AAACGGCCCAGTCAGCCTTGGGTTCGGACGTGAAAGATGCTGTCATAACTGTGCCTTTTGAGTTTGACGAGATGCAGAAGAATGCACTCAG
Seq C2 exon
GCAAGCTGCAGAAAGTGCCGGCTTCAATGTGTTACGGCTGATTCACGAACCCTCCGCTGCTCTTCTAGCTTACGACATCGGCCAGGACTCACCGCTGGGGAAAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000058030-'4-7,'4-6,5-7
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0001215=HSP70=FE(7.0=100)
A:
PF0001215=HSP70=FE(6.0=100)
C2:
PF0001215=HSP70=FE(7.0=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACAAGAGTGGCCTTCCCAGAT
R:
TGGCCGATGTCGTAAGCTAGA
Band lengths:
183-274
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]