MmuEX6098718 @ mm9
Exon Skipping
Gene
ENSMUSG00000051396 | Hspa14
Description
heat shock protein 14 [Source:MGI Symbol;Acc:MGI:1354164]
Coordinates
chr2:3416479-3419871:-
Coord C1 exon
chr2:3419766-3419871
Coord A exon
chr2:3418320-3418410
Coord C2 exon
chr2:3416479-3416583
Length
91 bp
Sequences
Splice sites
3' ss Seq
GTTTGCTCTTGAATGTACAGAAA
3' ss Score
5.77
5' ss Seq
GGGGTAAGT
5' ss Score
9.65
Exon sequences
Seq C1 exon
GTCATTGAGAAAAATGGGAAGTTGCGGTATGAAATAGATACAGGAGAAGAAACAAAACTTGTTAATCCAGAAGATGTTGCCAGACTGATATTCAGTAAAATGAAAG
Seq A exon
AAACAGCGCATTCTGTCCTGGGCTCAGATGCAAATGACGTGGTTGTCACTGTCCCATTTGACTTTGGAGAAAAGCAGAAGTCTGCTCTGGG
Seq C2 exon
GGAGGCGGCTGGAGCTGCTGGATTTAACGTGCTGCGGCTGATCCATGAGCCGTCTGCAGCTCTCCTTGCTTATGGGATTGGACAAGACCACCCTACCGGGAAGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000051396-'9-9,'9-8,11-9=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.028 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0001215=HSP70=FE(10.6=100)
A:
PF0001215=HSP70=FE(5.9=100)
C2:
PF0001215=HSP70=FE(10.6=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGAGAAAAATGGGAAGTTGCGGT
R:
CCCATAAGCAAGGAGAGCTGC
Band lengths:
177-268
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
Other AS DBs: