HsaEX6087614 @ hg19
Exon Skipping
Gene
ENSG00000187522 | HSPA14
Description
heat shock 70kDa protein 14 [Source:HGNC Symbol;Acc:29526]
Coordinates
chr10:14890789-14893322:+
Coord C1 exon
chr10:14890789-14890894
Coord A exon
chr10:14891720-14891810
Coord C2 exon
chr10:14893218-14893322
Length
91 bp
Sequences
Splice sites
3' ss Seq
TTATATTTTTTAATATGCAGAAA
3' ss Score
7.36
5' ss Seq
TGGGTAAGT
5' ss Score
10.24
Exon sequences
Seq C1 exon
GTCATTGAAAAAAATGGGAAATTACGATATGAAATAGATACTGGAGAAGAAACAAAATTTGTTAACCCAGAAGATGTTGCCAGACTGATATTTAGTAAAATGAAAG
Seq A exon
AAACGGCACATTCTGTATTGGGCTCAGATGCAAATGATGTAGTTATTACTGTCCCGTTTGATTTTGGAGAAAAGCAAAAAAATGCTCTTGG
Seq C2 exon
AGAAGCAGCTAGAGCTGCTGGATTTAATGTTTTGCGATTAATTCACGAACCGTCTGCAGCTCTTCTTGCTTATGGAATTGGACAAGACTCCCCTACTGGAAAAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000187522-'14-15,'14-13,16-15=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.014 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0001215=HSP70=FE(28.7=100),PF0348410=B5=PD(46.9=83.3)
A:
PF0001215=HSP70=FE(5.9=100)
C2:
PF0001215=HSP70=FE(6.9=100)
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACAAAATTTGTTAACCCAGAAGATGT
R:
TTTTTCCAGTAGGGGAGTCTTGT
Band lengths:
159-250
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)