DreEX0040343 @ danRer10
Exon Skipping
Gene
ENSDARG00000074149 | itpr1b
Description
inositol 1,4,5-trisphosphate receptor, type 1b [Source:ZFIN;Acc:ZDB-GENE-070604-2]
Coordinates
chr11:35617995-35638834:-
Coord C1 exon
chr11:35638723-35638834
Coord A exon
chr11:35622917-35622964
Coord C2 exon
chr11:35617995-35618124
Length
48 bp
Sequences
Splice sites
3' ss Seq
TGCTAACTCACGTCACTCAGGAG
3' ss Score
2.22
5' ss Seq
AGGGTAGGT
5' ss Score
8.1
Exon sequences
Seq C1 exon
ATTAATAAAACATACTAAGCAGCTTTTAGAGGAAAATGAAGAGCGCTTGTGTATAAAAGTCCTGCAGACACTTCGAGAAATGATGACTAAAGACCGAGGCTATGGGGAAAAG
Seq A exon
GAGTTTGATCCAAACCAGCCTCAGAAGCAACTGGAGGATCAGAAAAGG
Seq C2 exon
AGTGAGGCTTTGAGGCAAGTCCTGGTTAACCGTTACTATGGCAACTTCAAACCGGGCGGCAGACGAGACAGTTTGACGAATTTCAGCAATGGGCCGCTCACCCCTGTTGGGCAGACGAAGACTCCTGCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000074149_MULTIEX1-3/3=C1-C2
Average complexity
C2
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=1.000 C2=0.530
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGACCGAGGCTATGGGGAAAA
R:
AGGAGTCTTCGTCTGCCCAAC
Band lengths:
148-196
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]