GgaEX0012009 @ galGal4
Exon Skipping
Gene
ENSGALG00000008294 | ITPR1
Description
inositol 1,4,5-triphosphate receptor, type 1 [Source:RefSeq peptide;Acc:NP_001167530]
Coordinates
chr12:18474504-18479199:+
Coord C1 exon
chr12:18474504-18474539
Coord A exon
chr12:18476132-18476185
Coord C2 exon
chr12:18479067-18479199
Length
54 bp
Sequences
Splice sites
3' ss Seq
TGAAATTTCTACATGCACAGCAG
3' ss Score
2.81
5' ss Seq
AGGGTATGT
5' ss Score
8.34
Exon sequences
Seq C1 exon
CTGCCACAACCTCCAGAAGCGGAAAGCTCCGTAGAG
Seq A exon
CAGCAGGAGCTTGATCAAAGTCTACCACAGAGGCAACTGGAGGATCATAGAAGG
Seq C2 exon
GGCGAGGCGCTCCGGCAAGTTTTGGTCAACCGTTACTATGGCAACGTCAGGCCTGCGGGACGGAGGGAGAGCCTCACCAGCTTCGGCAACGGGCCTCTGTCTGCTGGCAGCACCGGCAAGGCTGGGGCAGGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000008294_MULTIEX3-19/24=18-20
Average complexity
C3
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (No Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.917 A=0.889 C2=0.364
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Inclusion Isoform:
ENSGALT00000013506fB1347
Main Skipping Isoform:
ENSGALT00000013506fB3405
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CACAACCTCCAGAAGCGGAAA
R:
AGCAGACAGAGGCCCGTT
Band lengths:
137-191
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]