GgaEX0012010 @ galGal4
Exon Skipping
Gene
ENSGALG00000008294 | ITPR1
Description
inositol 1,4,5-triphosphate receptor, type 1 [Source:RefSeq peptide;Acc:NP_001167530]
Coordinates
chr12:18463222-18480816:+
Coord C1 exon
chr12:18463222-18463333
Coord A exon
chr12:18479067-18479199
Coord C2 exon
chr12:18480626-18480816
Length
133 bp
Sequences
Splice sites
3' ss Seq
CTTGTCCTCTCTGAATCAAGGGC
3' ss Score
5.43
5' ss Seq
GAGGTGGGC
5' ss Score
6.32
Exon sequences
Seq C1 exon
ATTAATAAAGCATACTAAACAGCTGCTAGAGGAGAATGAAGAGAAACTATGTATTAAAGTATTACAGACACTCAGGGAAATGATGACCAAAGATAGAGGCTATGGAGAAAAG
Seq A exon
GGCGAGGCGCTCCGGCAAGTTTTGGTCAACCGTTACTATGGCAACGTCAGGCCTGCGGGACGGAGGGAGAGCCTCACCAGCTTCGGCAACGGGCCTCTGTCTGCTGGCAGCACCGGCAAGGCTGGGGCAGGAG
Seq C2 exon
GAGGAAGCTCTGGATCGAGTTCAATGAGCAGAGGTGAGATGAGTTTGGCAGATGTTCAGTGTCATCTGGATAAAGAAGGTGCATCCAACCTGGTCATAGACCTCATCATGAATGCCACCAGCGACAGAGTCTTCCATGAGAGCATCCTACTCGCCATTGCCCTTCTGGAAGGAGGCAACACTACAATACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000008294_MULTIEX3-20/24=16-21
Average complexity
C1
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.086 A=0.364 C2=0.170
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACAGCTGCTAGAGGAGAATGA
R:
TGGCGAGTAGGATGCTCTCAT
Band lengths:
250-383
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]