DreEX6023169 @ danRer10
Exon Skipping
Gene
ENSDARG00000014655 | itpr1a
Description
inositol 1,4,5-trisphosphate receptor, type 1a [Source:ZFIN;Acc:ZDB-GENE-070604-3]
Coordinates
chr6:39974078-39974701:+
Coord C1 exon
chr6:39974078-39974125
Coord A exon
chr6:39974328-39974454
Coord C2 exon
chr6:39974529-39974701
Length
127 bp
Sequences
Splice sites
3' ss Seq
CATGACCACTCTCATGACAGGGG
3' ss Score
6.83
5' ss Seq
CAGGTAAGT
5' ss Score
10.86
Exon sequences
Seq C1 exon
GTGGTGGATATCAGTCTGCCACCCAAACAGCAGGAGGATCGGCAGAGG
Seq A exon
GGGGAGGCCCTTCGGCAGCTGCTCGTCAATCGTTACTATGGCTTCAGGAGTGGTGGGCGGAGAGAAAGTCTGACCTCGTTTGGTAACTCCACCCTAACTCCTGTCGGGCCAATCAAGAGCCAGCCAG
Seq C2 exon
GGGGGTTGAGCAGGGCTGAGATGTCATTAATGGAGGTGCAGTGTCATCTAGACCGTGAAGGGGCATCGGATCTTGTCATTGATCTCATCATGAACACTACCAGCGACCGCGTCTTCCATGAAAGCATTCTGTTGGCCATCGCACTGTTGGAGGGCGGAAACACCATCATACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000014655-'42-50,'42-49,43-50=AN
Average complexity
A_C1
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.688 A=0.163 C2=0.017
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGTGGATATCAGTCTGCCACC
R:
TGTATGATGGTGTTTCCGCCC
Band lengths:
218-345
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]