MmuEX6006000 @ mm9
Exon Skipping
Gene
ENSMUSG00000030102 | Itpr1
Description
inositol 1,4,5-trisphosphate receptor 1 [Source:MGI Symbol;Acc:MGI:96623]
Coordinates
chr6:108382640-108390681:+
Coord C1 exon
chr6:108382640-108382690
Coord A exon
chr6:108388294-108388426
Coord C2 exon
chr6:108390491-108390681
Length
133 bp
Sequences
Splice sites
3' ss Seq
CATTATCCTGTTTAAATTAGGGT
3' ss Score
7.31
5' ss Seq
GAGGTAGGC
5' ss Score
8.99
Exon sequences
Seq C1 exon
CAGGAGCTTGAACCAAGTCCACCCCTGAGGCAACTGGAAGACCATAAAAGG
Seq A exon
GGTGAGGCACTCCGACAAATTTTGGTCAACCGTTACTATGGAAACATCAGACCTTCAGGAAGAAGAGAGAGCCTTACCAGCTTTGGCAATGGCCCACTATCACCAGGAGGACCCAGCAAGCCTGGTGGAGGAG
Seq C2 exon
GGGGAGGTCCTGGATCTAGTTCCACAAGCAGGGGTGAGATGAGCCTGGCTGAGGTTCAGTGTCACCTCGACAAGGAGGGGGCCTCCAACCTGGTCATCGATCTCATAATGAATGCATCCAGTGACCGAGTATTCCATGAAAGCATTCTGCTGGCCATCGCACTTCTGGAAGGAGGCAACACCACCATCCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000030102-'49-50,'49-49,50-50=AN
Average complexity
A_C1
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=1.000 A=0.530 C2=0.312
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CAGGAGCTTGAACCAAGTCCA
R:
CTGGATGGTGGTGTTGCCTC
Band lengths:
242-375
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
Other AS DBs: