DreEX6092763 @ danRer10
Exon Skipping
Gene
ENSDARG00000074149 | itpr1b
Description
inositol 1,4,5-trisphosphate receptor, type 1b [Source:ZFIN;Acc:ZDB-GENE-070604-2]
Coordinates
chr11:35615895-35622964:-
Coord C1 exon
chr11:35622917-35622964
Coord A exon
chr11:35617995-35618124
Coord C2 exon
chr11:35615895-35616103
Length
130 bp
Sequences
Splice sites
3' ss Seq
CACCCCCTTTGTTTTGTCAGAGT
3' ss Score
7.06
5' ss Seq
CAGGTGTGT
5' ss Score
6.99
Exon sequences
Seq C1 exon
GAGTTTGATCCAAACCAGCCTCAGAAGCAACTGGAGGATCAGAAAAGG
Seq A exon
AGTGAGGCTTTGAGGCAAGTCCTGGTTAACCGTTACTATGGCAACTTCAAACCGGGCGGCAGACGAGACAGTTTGACGAATTTCAGCAATGGGCCGCTCACCCCTGTTGGGCAGACGAAGACTCCTGCAG
Seq C2 exon
GGGGTGGTGGTGGTGGTGGTGGTGGTGGTGGTGGTTCAGCAGGGAGTCGGGGAGAGCTGAGTCTGGCTGAAGTGCAGTGTCACCTGGACAGAGAAGGAGCTTCTGACCTGGTCATTGACCTCATCATGAATGCCACCAGTGACCGGATCTTCCAGGAAAGCATCTTGCTGGCCATCGCTCTGCTTGAGGGAGGAAACCCCGTCATACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000074149-'47-44,'47-43,48-44=AN
Average complexity
A_C1
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=1.000 A=0.530 C2=0.267
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCAAACCAGCCTCAGAAGCAA
R:
TATGACGGGGTTTCCTCCCTC
Band lengths:
245-375
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]