RnoEX6014527 @ rn6
Exon Skipping
Gene
ENSRNOG00000007104 | Itpr1
Description
inositol 1,4,5-trisphosphate receptor, type 1 [Source:RGD Symbol;Acc:2933]
Coordinates
chr4:140464544-140472474:+
Coord C1 exon
chr4:140464544-140464591
Coord A exon
chr4:140470174-140470306
Coord C2 exon
chr4:140472284-140472474
Length
133 bp
Sequences
Splice sites
3' ss Seq
CATTATCCTATTCGAATTAGGGT
3' ss Score
6.1
5' ss Seq
GAGGTAGGC
5' ss Score
8.99
Exon sequences
Seq C1 exon
GAGCTTGAACCAAGTCCACCCCTGAGGCAACTGGAAGACCATAAAAGG
Seq A exon
GGTGAGGCACTCCGGCAAATTTTGGTCAACCGTTACTATGGAAACATCAGACCTTCAGGAAGAAGAGAGAGCCTTACCAGCTTTGGCAATGGTCCACTATCACCAGGAGGACCCAGCAAGCCTGGGGGAGGAG
Seq C2 exon
GGGGAGGTCCTGGGTCCGGCTCCACAAGCCGGGGTGAGATGAGCCTGGCTGAGGTTCAATGTCATCTCGACAAGGAAGGCGCCTCCAATCTGGTCATCGACCTCATAATGAATGCATCCAGCGACCGAGTATTCCACGAAAGCATTCTCCTGGCCATCGCACTTCTGGAAGGAGGCAACACCACTATCCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000007104-'63-65,'63-64,65-65=AN
Average complexity
A_C2
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=1.000 A=0.527 C2=0.317
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
ENSRNOT00000040255fB7095
Other Inclusion Isoforms:
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GAGCTTGAACCAAGTCCACCC
R:
TAGTGGTGTTGCCTCCTTCCA
Band lengths:
234-367
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]