GgaEX0027288 @ galGal4
Exon Skipping
Gene
ENSGALG00000008294 | ITPR1
Description
inositol 1,4,5-triphosphate receptor, type 1 [Source:RefSeq peptide;Acc:NP_001167530]
Coordinates
chr12:18463222-18479199:+
Coord C1 exon
chr12:18463222-18463333
Coord A exon
chr12:18466546-18466572
Coord C2 exon
chr12:18479067-18479199
Length
27 bp
Sequences
Splice sites
3' ss Seq
CTCTTTTTTTTTCCCAGCAGATT
3' ss Score
10.03
5' ss Seq
GAGGTTTTA
5' ss Score
-1.21
Exon sequences
Seq C1 exon
ATTAATAAAGCATACTAAACAGCTGCTAGAGGAGAATGAAGAGAAACTATGTATTAAAGTATTACAGACACTCAGGGAAATGATGACCAAAGATAGAGGCTATGGAGAAAAG
Seq A exon
ATTACCATTGAATTGGATAATGCTGAG
Seq C2 exon
GGCGAGGCGCTCCGGCAAGTTTTGGTCAACCGTTACTATGGCAACGTCAGGCCTGCGGGACGGAGGGAGAGCCTCACCAGCTTCGGCAACGGGCCTCTGTCTGCTGGCAGCACCGGCAAGGCTGGGGCAGGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000008294_MULTIEX3-17/24=16-20
Average complexity
C1
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (No Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.086 A=0.000 C2=0.364
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Inclusion Isoform:
ENSGALT00000013506fB3404
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Human
(hg38)
No conservation detected
Mouse
(mm10)
No conservation detected
Rat
(rn6)
No conservation detected
Cow
(bosTau6)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACAGCTGCTAGAGGAGAATGA
R:
GGTTGACCAAAACTTGCCGGA
Band lengths:
125-152
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]