DreEX0040350 @ danRer10
Exon Skipping
Gene
ENSDARG00000011909 | itpr2
Description
inositol 1,4,5-trisphosphate receptor, type 2 [Source:ZFIN;Acc:ZDB-GENE-050419-192]
Coordinates
chr18:16064834-16073364:+
Coord C1 exon
chr18:16064834-16065021
Coord A exon
chr18:16068551-16068731
Coord C2 exon
chr18:16073120-16073364
Length
181 bp
Sequences
Splice sites
3' ss Seq
TCTTATGCGTGTCTGTGCAGAAC
3' ss Score
8.85
5' ss Seq
AAGGTACAC
5' ss Score
7.56
Exon sequences
Seq C1 exon
GTGGCTCTCCAGGACAGGACTCTGATAAACCAGGCACAAGCTTAGCAGATATCCAGTGTGTGCTGGACAATGTCGGAGCTTCCGAGCTGGTCGTCGACCTCATAGTCAGCACTAAAAATGACCGGATCTTTGAGGAGAGCATTTTACTGGGCATCGCACTGCTGAGAGGAGGGAATACACAAATTCAG
Seq A exon
AACTCATTTCACAATCAATTGCACAAGCAGAAGAAGTCTGAGAAGTTCTTCAGGGTCTTCTATGAGCGCATGGAGCAGGCCCAGAAGGAGATCCGTTCCAGCGTCTCTGTCAACATGTTTGAGCTCAGCTGCAGGAAGAGGGAGGAGGAGAGCGAGGGCTCCGGGATCAGACATAAGAAAG
Seq C2 exon
TGCGAGACTCCTTGCACCTCAGAGAAGAGATGCGGGGTCAGCTTAAAGACGCCTCCTCTGTGACCTCCAAAGCCTACAGCACCTTTCGCCGGGAATGGGACCCTGACATTGAAGCAGTGGGAACAACAGGAGATGCGACAGAGGAAGTGGTCGAGGAAATCCAAATGAGCCAGGCCATCACCATCATGAAGCCCATCTTACGCTTCCTTCAGCTGCTCTGTGAAAATCACAACAGAGACCTTCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000011909-'45-47,'45-46,46-47
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.183 A=0.230 C2=0.018
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
PF084546=RIH_assoc=PU(29.9=35.4)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTGGACAATGTCGGAGCTTCC
R:
CTGCTTCAATGTCAGGGTCCC
Band lengths:
243-424
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]