RnoEX0045422 @ rn6
Exon Skipping
Gene
ENSRNOG00000001804 | Itpr2
Description
inositol 1,4,5-trisphosphate receptor, type 2 [Source:RGD Symbol;Acc:69649]
Coordinates
chr4:180549053-180555187:-
Coord C1 exon
chr4:180555000-180555187
Coord A exon
chr4:180550664-180550847
Coord C2 exon
chr4:180549053-180549309
Length
184 bp
Sequences
Splice sites
3' ss Seq
AAACTCTGCTTTCTCTGCAGAAT
3' ss Score
9.91
5' ss Seq
GAGGTGAGG
5' ss Score
8.41
Exon sequences
Seq C1 exon
GGGGCTTCACTGGACAGGATGCCGATAAGACGGGGATTTCCATGTCCGATATCCAGTGTTTGCTGGACAAGGAAGGGGCCTCCGAACTTGTCATCGATGTCATTGTGAACACCAAAAACGACAGGATCTTTTCCGAGGGCATCTTGCTTGGCATTGCCCTGCTGGAAGGAGGAAACACACAAACCCAG
Seq A exon
AATTCTTTCTACCAGCAGTTGCATGAACAAAAAAAGTCAGAGAAATTCTTCAAAGTCCTTTACGATCGGATGAAGGCTGCTCAGAAAGAGATCAGATCCACGGTGACTGTCAACACCATAGACTTAGGGAGCAAGAAGAGAGAGGAGGACAGTGACCTCATGGCCTTGGGCCCTCGGATGAGAG
Seq C2 exon
TGAGAGACTCATCGCTGCATTTGAAAGAGGGAATGAAAGGGCAGTTGACTGAGGCGTCTTCAGCCACGTCCAAAGCATACTGTGTGTACAGAAGGGAAATGGACCCAGACATTGACACAATGTGCCCGGGACAGGAAGCAGGAAGTGCGGAGGAAAAGTCTGCAGAGGAAGTTACCATGAGCCCAGCCATCACTATCATGCGGCCCATCCTCAGGTTCCTGCAGTTACTGTGTGAGAATCACAACCGGGAGCTTCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000001804-'59-53,'59-51,60-53
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.258 C2=0.291
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
PF084546=RIH_assoc=PU(24.4=33.7)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTTTTCCGAGGGCATCTTGCT
R:
GCTGGGCTCATGGTAACTTCC
Band lengths:
248-432
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]