DreEX0040310 @ danRer10
Exon Skipping
Gene
ENSDARG00000014655 | itpr1a
Description
inositol 1,4,5-trisphosphate receptor, type 1a [Source:ZFIN;Acc:ZDB-GENE-070604-3]
Coordinates
chr6:39974529-39977137:+
Coord C1 exon
chr6:39974529-39974701
Coord A exon
chr6:39976097-39976280
Coord C2 exon
chr6:39976884-39977137
Length
184 bp
Sequences
Splice sites
3' ss Seq
GTGTTTTTATCTGGTTGCAGCAT
3' ss Score
8.18
5' ss Seq
GAGGTCTGG
5' ss Score
2.59
Exon sequences
Seq C1 exon
GGGGGTTGAGCAGGGCTGAGATGTCATTAATGGAGGTGCAGTGTCATCTAGACCGTGAAGGGGCATCGGATCTTGTCATTGATCTCATCATGAACACTACCAGCGACCGCGTCTTCCATGAAAGCATTCTGTTGGCCATCGCACTGTTGGAGGGCGGAAACACCATCATACAG
Seq A exon
CATTCCTTCTTCAAACGTTTAACAGAAGACAAAAATTCAGAGAAGTTTTTCAGGGTGTTTTATGACAGAATGAAAGTGGCTCAGGTGGAGATCAAAGCCACGGTTACTGTCAACACTAGTGACCTCGGCAACAAGCGGCGTGACGACAACACTCCAGACAAAGATACTCCACAACGCCGCAGAG
Seq C2 exon
GTAAAGACTCCGGTGTGGTGGTGACAGATGATGCTCGTGAGCAGCTGTTGGAGGCTTCAGCTGCGACTAAGAAGGCCTTTGGTTCATATCGTCGAGATGCTGATCCCGAGGAGACGTTTGGCACGGCTGATGGAGATAAAGGAGGTGGAGATAAAGGCACAGAGCAGGGCGAGATGAGCCCTGTCATCCTCATAATGCAGCCAATCCTGCGCTTCCTGCAGCTGCTGTGCGAAAACCACAATCGAGACCTGCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000014655-'44-52,'44-51,45-52
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.017 A=0.371 C2=0.376
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
PF084546=RIH_assoc=PU(24.2=34.1)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GTTGAGCAGGGCTGAGATGTC
R:
AAAGGCCTTCTTAGTCGCAGC
Band lengths:
249-433
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]